Vagococcus xieshaowenii: E4Z98_04855
Help
Entry
E4Z98_04855 CDS
T05932
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vac
Vagococcus xieshaowenii
Pathway
vac03410
Base excision repair
vac03430
Mismatch repair
vac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E4Z98_04855 (recJ)
03430 Mismatch repair
E4Z98_04855 (recJ)
03440 Homologous recombination
E4Z98_04855 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vac03400
]
E4Z98_04855 (recJ)
DNA repair and recombination proteins [BR:
vac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E4Z98_04855 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E4Z98_04855 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E4Z98_04855 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QCA29594
UniProt:
A0AAJ5EEV9
LinkDB
All DBs
Position
1005947..1008055
Genome browser
AA seq
702 aa
AA seq
DB search
MDKAVSRLYEAIEAGQKIVIYGDYDADGITSTTVMKEAIELVGGDVSYFLPNRFDHGYGP
NIAVYETLINEGAELIVTVDNGVTGHEAIEYAKSRGVDVIVTDHHELPQELPEPYALIHP
KHPKGSYPFGDLAGVGVAFKVATALLEEVPVELLDLVAIGTIADLVSLTGENRTLVKHGL
SLMKQTDRIGLNALMDIAKIDKSSLTSESVGFGIGPRLNAIGRIGDATPGVALMSTFDEE
EAIELASFIQKKNEERQAIVASISQEALAIVDQMGEQPIYLIAKEGWNEGVLGIVASQVV
QKTNKPSIILSINPATGMAKGSGRSIEQINLYELLSEVNDDLVKFGGHHMAAGMTIEQDK
LTSIQEQLRQRILELDIDFSKGQPLEVEDYLSLDQLDVAFVETIQALGPFGTDNPSPIFL
FENGKSIGAKAIGTDQKHLKFQYQTPTTTLDVIGFGYGPQLMEVESANELAIVGELAVNE
WNGNKKVQLMLKDYGINETQVFDYREKLHLLPELLTLPNTFYVLFDGKNLNQFKDIPKEH
LLMISNQVSLSSYAGIAQSVVFLDCPDEEQQLLEVVQALQVERVYLLLYSKEQCYLNGMP
SREAFGKLFKLVQTKQEIDVRYKLHDLAKFLNVEFHTIIFMINVLFDLKFVTIENGVMSK
VTQTNFTPLSASNVFQRRERKMKTEKFLLYSNIAELEKWLFQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggataaggcagtgagtcgtttatacgaagccatcgaagctggtcaaaaaatagttata
tatggtgattatgatgcagatggtattacgagtaccacagtaatgaaagaagccatcgaa
ttagttggaggagatgtctcttattttcttcctaatcgttttgatcatggttatggacca
aacattgccgtgtatgaaacgctaattaatgaaggggctgaattaattgtaacggttgat
aatggcgtaacgggtcatgaagcaattgaatatgctaagtctagaggcgtagacgttatt
gtcaccgatcaccatgaactaccacaagagctacccgaaccgtacgctttaattcatcca
aaacatccaaagggaagctatccattcggtgatctagccggtgtaggcgttgcctttaaa
gtagcaaccgctcttcttgaagaagtacccgttgaattgctagacttagtggccattggt
acgattgcagatttagtctcgttgactggtgaaaatcgtacgcttgtaaagcatggccta
tctcttatgaaacaaacagatcgtataggcttaaacgccttaatggacattgcaaagatc
gataagtcatccctaacctcagaatcagttggatttggcatagggccacgcttaaatgcg
attggaagaattggagatgccacgccaggtgttgccttgatgagtacatttgatgaggaa
gaagcaatagagctagctagttttattcaaaagaaaaacgaagaacgacaagctatcgtt
gcaagcattagtcaagaagcattagcaatcgtcgatcagatgggcgaacaaccgatttat
ttaattgcaaaagaaggttggaacgaaggtgtactaggaattgtggctagtcaagtcgtt
caaaaaactaataaaccttctatcatcctttcaattaaccctgcaactggtatggcgaaa
ggttctggccgaagtattgaacaaatcaatctatatgagttattatcagaagttaatgat
gatttagtcaaatttgggggccatcatatggcagcaggaatgacgattgagcaagacaag
ttaacttctattcaagaacagttacgtcaacgcatacttgaactagacattgatttttca
aaaggacaacctctagaagtggaagactatctttctcttgatcaacttgatgtggccttt
gttgagacgattcaggcgctaggaccttttggaacagataatccttctcctattttctta
tttgaaaacggtaaatctataggtgctaaagccatcggtactgaccaaaagcatttgaaa
ttccaataccagacacctactacgacattagatgtgattggatttggatatggacctcaa
ttaatggaggtcgaaagtgctaatgaactagccattgtgggtgaattggcagttaacgaa
tggaatggcaataaaaaagtacaattaatgctgaaagattatggtattaatgaaacacaa
gtttttgattacagagagaaactacatcttctaccagaattattaacattacctaatacg
ttttacgttttgttcgatggaaaaaacttaaatcaatttaaagacattcctaaagaacat
ttactgatgatttcaaatcaagtatcgttatcttcttacgcaggcatagcacaatcagtc
gtatttttagattgccccgatgaagaacaacagttacttgaagttgtccaagcgcttcaa
gttgaaagagtttatttgcttttatatagtaaagaacagtgctacttaaatggcatgcca
tcacgagaagcttttgggaaattatttaagttagttcagacaaagcaagaaattgatgtt
cgttataaattacacgatctagcaaaattcttaaatgtagaatttcatacaataattttt
atgattaatgtgctttttgacctgaaatttgttacaatagagaacggagtgatgagtaaa
gttacacaaacgaactttaccccactgtcagcaagtaacgtgtttcaacgtcgtgaacga
aaaatgaagacagagaaatttttactttatagtaatattgcagaattagagaaatggctg
tttcaatag
DBGET
integrated database retrieval system
