Variovorax sp. EBFNA2: RZE79_02115
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Entry
RZE79_02115 CDS
T10564
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
vae Variovorax sp. EBFNA2
Pathway
vae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RZE79_02115 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vae03400
]
RZE79_02115 (uvrA)
DNA repair and recombination proteins [BR:
vae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RZE79_02115 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RZE79_02115 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_23
DnaJ_CXXCXGXG
RsgA_GTPase
BCA_ABC_TP_C
nSTAND3
AAA_21
ATPase
AAA_25
Viral_helicase1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
WPG40634
LinkDB
All DBs
Position
complement(459170..462172)
Genome browser
AA seq
1000 aa
AA seq
DB search
MLAQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SAYARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGT
PFCPDHHLPLQAQTVSQMVDATLALPDEPRLMILAPVAREKKGEFLELFTEMQAAGYVRF
RVDGQTYEYNDLPKLKKTEKHDIDVVIDRLRARPDMQQRLAESFEAALRLAEGRAIALEL
GAEGAADKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPVRVV
AFPSLSIASGAIKGWDRRNGYYFSMVESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEE
IKFNYTMESGNFAGKKLTKKHPFEGIIPNMTRRYRETDSVMVREDLARFRNQQPCPDCGG
SRLRREARNVFLVDDTGHVAANGGEPPRMAIFELSHLTLRDAYAWFSTLKLRGAKADIAD
KVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSI
GLHQRDNDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTY
AEVSANPDSLTGQYLSGTKKIEVPKHRTAWLPAVKKPAFNEGKKPSRFPQSPAAERRAAR
EAAHLASQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVA
RTLYRAHEEPAEHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNT
ARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVQY
KGKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKL
ALELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADW
LIDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
ctgctcgcccagcagcgcatcagcatccgcggcgcgcgcacccacaacctgaagaacgtc
gacctcgacattccgcgcaacaagctggtggtcatcaccggcctgtcgggctcgggcaag
tcgagcctggcgttcgacacgctgtatgccgaagggcagcggcgctacgtggaaagcctc
tcggcctatgcgcggcagttcctgcagctcatggacaagcccgatgtcgacgtgatcgag
ggcctgtcgcccgccatcagcatcgagcagaaggccaccagccacaacccgcgctccacc
gtgggcacggtgaccgagatccacgactacctgcgcctgctgtatgcgcgcgccggcacg
cccttctgccccgaccaccacctgccgctgcaggcgcagacggtctcgcagatggtcgac
gcgacgctggcgctgcccgacgagccccgcctcatgatcctggcgcccgtggcgcgcgag
aaaaagggtgagtttctcgagctcttcaccgagatgcaggcggccggctacgtgcgcttt
cgcgtcgacgggcaaacctacgaatacaacgacctgcccaagctcaagaaaaccgagaag
cacgacatcgacgtcgtcatcgaccgcctgcgcgcgcgccccgacatgcagcagcgcctg
gccgagagcttcgaggccgcgctgcgcctggccgaaggccgcgccattgcgctggagctg
ggcgccgagggtgcggccgacaaggagcacctgttcaacgccaagttcgcctgcccgatc
tgccactactcgctgtccgagctcgaaccgcgcctgttctcgttcaactcgcccgtgggc
gcctgccccagctgcgacggcctgggccaccgcgaggtgttcgacccggtgcgcgtggtg
gcgtttccgtcgctgtcgatcgccagcggcgccatcaagggctgggaccgccgcaacggc
tactacttcagcatggtcgagagcgtcgccaagcactacaagttcgacgtcgatgcaccc
ttcgaatcgctgccggcctcggtgcagcaggtgctgctgcatggctcggccgctgaagag
atcaagttcaactacaccatggagtcgggcaacttcgcgggcaagaagctcacgaagaag
caccccttcgaggggatcatcccgaacatgacgcggcgctaccgcgagaccgattcggtg
atggtgcgcgaagacctcgcgcgctttcgcaaccagcagccctgccccgactgcggcggc
tcgcggctgcggcgcgaggcacgcaatgtgttcttggtggacgacaccggccacgtggcc
gcgaacggcggcgagcccccgcgcatggcgatcttcgaactgagccacctcacgctgcgc
gacgcctacgcctggttcagcacgctcaagctgcgcggcgccaaggccgacatcgccgac
aaggtggtgcgcgagatcggcctgcgcctcaaattcctcaacgacgtgggcctcaactac
ctgagcctggaccgcagcgccgaaacgctctcgggcggcgaggcgcagcgcattcgcctc
gcgtcgcagatcggctcgggcctcacgggcgtgatgtacgtgctcgacgagcccagcatc
ggcctgcaccagcgcgacaacgaccggctcatcggcacgctgaagcatctgcgcgacatc
ggcaacagcgtgatcgtggtcgagcacgacgaggacatgatccacgccgccgaccacgtc
atcgacatgggccccggcgccggcgtgcacggcgggcgcgtgatggcgcagggcacgtac
gccgaggtgtcggccaaccccgactcgctcaccggccagtacctctcgggcacgaagaag
atcgaggtgcccaagcaccgcaccgcgtggctgccggccgtgaagaagccggccttcaac
gaaggcaagaaaccctcccgctttccgcagagccccgcggccgaacgccgtgcggcgcgc
gaagcggcgcacctggcctcgcagaccgacctgcaggagatccgcgtcgtcggtgccacc
ggcaacaacctgaagaacgtgagcgtcgccttccccgtcggcctgctgacctgcgtgacg
ggcgtctcgggctcgggcaagtcgacactggtgaacgacacgctctacgccgccgtggca
cgcacgctgtaccgcgcccacgaagagcccgccgagcacgagtcggtcgagggcatcgag
tatttcgacaaggtcatcaacgtcgaccagtcgcccatcggccgcacgccgcgcagcaac
ccggccacctacacgggcctgttcacgcccatccgcgaactgatggccgagaccaacacc
gcgcgcgagcgcggctacggcccgggccgcttcagcttcaacgtggcaggcgggcgctgc
gaggcctgccagggcgacggtgtggtgaaggtcgagatgcacttcctgcccgacgtctac
gtgccctgcgaggtctgccacggccagcgctacaaccgcgagacgctcgaggtccagtac
aagggaaagaacatcgcgcagatcctcgagatgacggtcgagaccgcgcacgagttcctg
aaggccgtgccgaccatcgagcgcaagctgcgtacgctgctcgacgtgggcctcagctac
atcaagctcggccagtcggccaccacgctgtcgggcggcgaggcgcagcgcgtgaagctc
gcactcgaactgagcaagcgcgacacgggccgcacgctgtacatcctcgacgaaccgacg
accggcctgcacttcgccgacatcgaactgctgctgaaggtgctgcaccagctgcgcgac
gcgggcaacaccatcgtcgtcatcgagcacaacctggacgtcatcaagacggccgattgg
ctcatcgacatgggccccgaaggcggcgccggcggcggcacggtggtgggcgagggaacg
ccggaagacatcgcggcgaacgaggcgagccacacggggcggtacctcaagcgcctgctg
tag
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integrated database retrieval system
