Variovorax sp. EBFNA2: RZE79_04105
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Entry
RZE79_04105 CDS
T10564
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
vae Variovorax sp. EBFNA2
Pathway
vae00300
Lysine biosynthesis
vae00470
D-Amino acid metabolism
vae01100
Metabolic pathways
vae01110
Biosynthesis of secondary metabolites
vae01120
Microbial metabolism in diverse environments
vae01230
Biosynthesis of amino acids
Module
vae_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RZE79_04105 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RZE79_04105 (dapF)
Enzymes [BR:
vae01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RZE79_04105 (dapF)
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Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
WPG38525
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Position
915253..916137
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AA seq
294 aa
AA seq
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MRIRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAAGIDF
QYVIHNADGGEVEQCGNGARCFMRFVSEHGLTDKKDVRVQTLAGVIEPRMGDDGRVTVDM
GAPVFEPARVPFDTAGLDPQPEGAWQKWHLALGTRAGSAIVSVAVLSMGNPHAVQVVDNV
DTAPVAEQGPQIEHHPRFPQRVNAGFMQVLDRSNIKLRVFERGAGETLACGTGACAAVVA
GIRLGLLDSRVDVQTHGGILTIEWQGDGRPVLMTGPATTVFEGEIDVPDISEQP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatccgctttaccaagatgcagggagccggcaacgatttcgtcgtgctcgacgaa
acgcgcggcacgctgggcctcagcgccgcgcagtaccgcttcctggccgaccgccatttc
ggcgtcggcgccgaccagatcctcacggtgcgcccgtcgcccgctgcaggcatcgacttc
cagtacgtgatccacaacgccgacggcggcgaggtggagcagtgcggcaacggggcgcgc
tgtttcatgcgcttcgtgagcgagcacggcctgaccgacaagaaagacgtgcgcgtgcag
acgctggccggcgtgatcgagccgcgcatgggcgacgacggccgcgtgacggtcgacatg
ggcgccccggtcttcgaaccggcgcgcgtgcccttcgacacggccgggctcgacccgcag
cccgaaggcgcgtggcagaagtggcacctcgccttgggcacccgggccggcagcgctatc
gtttcggtcgctgtgctgtcgatgggcaacccgcacgcggtgcaggtggtcgacaacgtc
gacacggcgccggtggccgagcagggcccgcagatcgagcaccacccgcgttttccgcag
cgcgtgaacgcaggcttcatgcaggttctcgaccggtcgaatatcaagctgcgggtgttc
gagcgcggcgccggcgaaacgctggcctgcggcacgggcgcctgcgcggcggtggtggcg
ggcattcgcctggggctgctggactcccgcgtcgacgtgcagacgcacggcggcattctc
acgatcgagtggcagggcgacggccggccggtgctcatgacaggaccggccacgacggtg
ttcgagggcgagatcgacgtgcccgacatttcggaacagccatga
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