Variovorax sp. EBFNA2: RZE79_04295
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Entry
RZE79_04295 CDS
T10564
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vae Variovorax sp. EBFNA2
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vae03016
]
RZE79_04295
Enzymes [BR:
vae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RZE79_04295
Transfer RNA biogenesis [BR:
vae03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RZE79_04295
BRITE hierarchy
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GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
WPG38559
LinkDB
All DBs
Position
complement(957581..959653)
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AA seq
690 aa
AA seq
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MFVLFEEAGKYLGGRVLSEAEASAQVELETGKRVKVKGANIVLRFEKPAPAELMAEARAL
AAAMDLDLAWEFAAEGEFGFADLAADYFSEKPTLAQQAAALFALFEAPHYFRRAGKGRFK
KAPAEIVQQALAAIEKKKAIQAQIVEWAGQLAEGVCPPAIREQLYKILFKPDKNAPEYKA
VVDAARATQRPPLDLLERAGAIDSPYQFHWRRFLFENFPKGTGFPALAAPAVADDLPLAE
GVRAFSIDDSQTTEIDDALSVQGMGSGTITVGIHIAAPGLALTPGSAIDAVARARMSTVY
MPGYKITMLPDEVVDTYTLLEGGDRPAVSLYARFDEATLELQGTETKLERVPIVANLRHD
QLDAVVTQPWLEDATFNSDNTPDAAAQLRAPLSFLFRLAKHLKAQREVVRGKPENFSRPD
YNFRLVGNDGAEPTGNEQVQITTRQRGAPLDLIVSEAMILANSSWGGWLGELGVPGLYRS
QASLAPGIKVRMGTRALPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIAAARHGKTAALAA
PFKPKDADLFSILSGFDAAYATYNAYQGGMERFWTLKYLQQQGITELEATVIKDIPNGAL
VRADALPLVFPVAGQQERGARVRVKLGEIDEIALDVSGTVLERFDMPKTDAAADESGGED
DEEEVAGPIAIAVDLSDSEAAPDPTTTAPA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtattgtttgaagaagccggtaaatacctcggcggccgcgtcctgtcggaagcc
gaagcctcggcacaggtcgagctcgagaccggcaagcgcgtcaaggtcaagggcgccaac
atcgttctgcgtttcgagaaaccggccccggccgagctgatggccgaggcgcgcgcgctg
gccgccgccatggacctcgacctcgcctgggaattcgcagccgaaggcgagttcggcttt
gccgacctggccgccgactatttcagcgagaagcccacgctggcgcagcaggccgctgcg
ctgttcgcgctgttcgaggcgccgcactacttccgccgcgcgggcaaggggcgcttcaag
aaggcgcccgccgagatcgtgcagcaggcgctggccgccatcgagaagaagaaagccatc
caggcgcagatcgtcgaatgggccgggcaactggccgaaggcgtgtgcccgccggcgatc
cgcgagcagctctacaagatcctgttcaagcccgacaagaacgcccccgaatacaaggcc
gtggtcgatgccgcgcgcgccacgcagcgcccgccgctcgacctgctggagcgcgccggc
gccatcgattcgccctaccagttccactggcggcgcttcctgttcgagaacttccccaag
ggcaccggctttcccgcgctcgcggcgccggccgtcgccgacgacctgccgctggccgaa
ggcgtgcgggccttctcgatcgacgattcgcagaccaccgaaatcgacgacgcgctgtcg
gtgcagggcatgggcagcggcaccatcacggtcggcattcacatcgcggcgccgggcctg
gcgctgacgccaggcagcgccatcgacgcggtggcgcgcgcgcgcatgtccaccgtgtac
atgccgggctacaagatcaccatgctgcccgacgaggtggtcgacacctacacactgctc
gaaggcggcgaccgcccggccgtgtcgctctatgcgcgcttcgacgaagccacgctggaa
ctgcaaggcaccgagaccaagctcgagcgcgtgccgatcgtcgccaacctgcgccacgac
cagctcgacgccgtcgtcacgcagccctggctcgaagacgccaccttcaattcggacaac
acgcccgacgccgccgcgcaactgcgcgcgccgctctccttcctgttccgcctcgccaag
cacctgaaggcgcagcgcgaagtggtgcgcggcaagcccgagaacttcagccggcccgac
tacaacttccgcctcgtcggcaacgacggcgcggaacccaccggcaacgagcaggtgcag
atcaccacgcgccagcgcggcgcgccgctcgacctgatcgtgtccgaggccatgatcctg
gccaacagcagctggggcggctggctcggcgaactcggcgtgcccggcctgtaccgcagc
caggccagcctggcgcccggcatcaaggtgcgcatgggcacgcgcgcgctgccgcacgcg
ggcctgggcgtgaagagctacgcctggagcacctcgccgctgcgccgctacaccgacctc
gtgaaccagtggcagatcatcgcggccgcgcgccacggcaagaccgccgcgctggccgcg
cccttcaagccgaaggacgccgacctgttctcgattctttcgggcttcgacgccgcctat
gccacgtacaacgcctaccaaggcggcatggagcgcttctggacgctcaagtacctgcag
cagcaaggcatcaccgagctcgaagccacggtcatcaaggacattcccaacggtgcgctg
gtgcgtgccgatgcgctgccgctggtgttcccggtggccggccagcaggagcgcggtgcg
cgcgtgcgcgtgaagctcggcgaaatcgacgagatcgcactcgacgtgagcggcaccgtg
ctcgaacgcttcgacatgccgaaaaccgatgccgcagccgatgaaagcggcggcgaggac
gacgaagaagaagtcgccggcccgatcgccatcgcggtcgacctgagcgacagcgaggcc
gcacccgacccgacgacgaccgcgcctgcatga
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