Variovorax sp. EBFNA2: RZE79_04400
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Entry
RZE79_04400 CDS
T10564
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
vae Variovorax sp. EBFNA2
Pathway
vae02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RZE79_04400
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vae02022
]
RZE79_04400
02035 Bacterial motility proteins [BR:
vae02035
]
RZE79_04400
Two-component system [BR:
vae02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
RZE79_04400
Bacterial motility proteins [BR:
vae02035
]
Pilus system
Twitching motility proteins
RZE79_04400
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA
AAA_5
HTH_23
HTH_28
HTH_30
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WPG38579
LinkDB
All DBs
Position
complement(982506..984056)
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AA seq
516 aa
AA seq
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MSSLPPSAAASRPAQILVIDDEPDLRTLYELTLLREGYRVEAAGSVSEAWQHLEAGRFDA
VITDMRLPDGEGMEIIHRIQKDQRSERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQ
FRAVVASAVQANRAAVVVPQKPAPQAAGRSGERPDALAVTRSGATALDRLVGDSEPMRLV
KSRIAKVARGMAPVLVRGESGTGKELVARAVHGCSQRSDGPFVAVNCGAIPENLLEAEFF
GAKKGSYTGSSQDRDGYFQAARDGTLFLDEIGDLPLAMQSKLLRAIQERSVRAIGSTQED
AVDVRIVSATHKDLHAEVLAGRFRQDLFYRLNVIEIAVPALRERREDLPALCTALLARIA
QDGGLPAPRLSDALLQRLAQHPLDGNVRELENLLHRAVALNDGDELHIDLMGAMPVAPRT
ESIVPTEAATAAVAAPAPAPAVEPKPAPPPLPSDLQAWLDQQEREILVRALHESGFNRTA
AAARLGMSLRQIRYRIARLGISTPNGDDGATAHADD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccctcccgccctccgccgccgcctcgcgccccgcgcagatcctcgtcatcgac
gacgagcccgacctgcgcacgctctacgaactcacgctgctgcgcgaaggctaccgggtg
gaggccgcgggcagcgtgtccgaagcctggcagcacctcgaggccggccgcttcgacgcc
gtgatcaccgacatgcggctgcccgacggcgaaggcatggagatcatccaccgcatccag
aaggaccagcgcagcgagcgttgcgtggtcatgaccgcctacggctcggccgagaacgcg
gtcgaggcgctgaaggccggcgccttcgactacctcacgaagccggtcgacctgaagcag
ttccgcgcggtggtcgcgtcggccgtgcaggccaaccgcgccgcggtggtcgtgccgcag
aagcccgcgccgcaagccgccggccgcagcggcgaacgccccgacgcactggccgtgacg
cgcagcggcgccaccgcgctcgaccggctggtcggcgactccgagccgatgcgcctcgtc
aagtcgcgcatcgccaaggtggcgcgcggcatggcgcccgtgctggtgcgcggcgaatcg
ggcaccggcaaggagctggtcgcgcgcgccgtgcacggctgcagccagcgcagcgacggc
ccgttcgttgcggtgaactgcggcgccattcccgagaacctgctcgaggccgagttcttc
ggcgccaagaagggctcgtacaccggctcgtcgcaagaccgcgacggctacttccaggcg
gcgcgcgacggcacgctgtttctcgacgagatcggcgacctgccgctggccatgcagtcg
aagctgctgcgcgccatccaggaacgcagcgtgcgcgccatcggctcgacgcaggaagac
gcggtcgacgtgcgcatcgtgagcgccacccacaaggatctgcacgccgaagtgctggcc
ggccgcttccggcaagacctgttctaccgcctcaacgtgatcgagatcgcggtgcccgcg
ctgcgcgagcgccgcgaagacctgcccgccctgtgcaccgcgctgctcgcacgcatcgcg
caagacgggggcctgccggcgccgcgcctgtccgacgcgctgctgcagcgcctggcccag
cacccgctcgacggcaacgtgcgcgaactcgagaacctgctgcaccgcgccgtggcgctg
aacgacggcgacgagctgcacatcgacctcatgggtgcgatgccggtggcgcctcgcacc
gaatcgatcgtgccgaccgaggcggcgaccgccgctgttgcggcgcccgcaccggcacca
gccgtcgagcccaagcccgcaccgccgccgctgccttccgatctgcaagcctggctcgac
cagcaggagcgcgagatcctcgtgcgcgcgctgcacgaaagcggcttcaaccgcacggcc
gccgccgcgcggctgggcatgagcctgcgccagatccgctaccgcatcgcgcgcttgggc
atctccacgcccaacggcgacgacggcgccaccgcgcatgccgacgactga
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