Variovorax sp. EBFNA2: RZE79_09285
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Entry
RZE79_09285 CDS
T10564
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
vae Variovorax sp. EBFNA2
Pathway
vae02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RZE79_09285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vae03021
]
RZE79_09285
Transcription machinery [BR:
vae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RZE79_09285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
HTH_29
HTH_38
HTH_Tnp_4
HTH_11
DUF6362
HTH_24
LacI
HTH_28
HTH_Tnp_ISL3
GerE
HTH_36
HTH_IclR
HTH_31
HTH_10
HTH_7
HTH_3
MerR
HTH_40
HTH_17
TnsD
HTH_20
DUF3080
Motif
Other DBs
NCBI-ProteinID:
WPG39516
LinkDB
All DBs
Position
complement(2024173..2024685)
Genome browser
AA seq
170 aa
AA seq
DB search
MPSPAVVAPIDALYREHRDWLLGWMRRRLNDGHMAADLTQDTFVRVVVGGQAPVLQEPRA
YLTTLAQRVLYNFWRRRELERAWIEALATQPQELAPSPETCALVREALETLDRWLDGLPS
KAREAFLLRRLEGLAHGEIAQRMGVSVSTVERYIKQAVVHLYTCPVQPDA
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgccctcccccgctgtggtcgccccgatcgatgcgctctatcgcgagcaccgcgactgg
ctgctgggctggatgcggcgccgcctgaacgatggccacatggccgcggacctgacgcag
gacaccttcgtgcgcgtcgtcgtcggcggccaggccccggtgcttcaggaaccccgcgcc
tacctcaccacgctggcgcagcgtgtgctctacaacttctggcgccgacgtgaactggag
cgcgcctggatcgaggcgctcgcgacccagccgcaggagctggcaccttcccccgaaacc
tgcgcgctggtgcgcgaggccctcgagacgctggaccgatggctcgatggcctgccttcc
aaggcgcgcgaggccttcctgttgcgccggctcgaaggcctcgcacatggcgagatcgcg
caacgcatgggtgtctcggtttccacggtcgagcgctacatcaagcaggccgtcgtgcac
ctgtacacctgcccggtacagcccgatgcctga
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