Variovorax sp. EBFNA2: RZE79_10490
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Entry
RZE79_10490 CDS
T10564
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vae Variovorax sp. EBFNA2
Pathway
vae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RZE79_10490 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vae03021
]
RZE79_10490 (rpoD)
Transcription machinery [BR:
vae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RZE79_10490 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
ATG17_like
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
WPG39743
LinkDB
All DBs
Position
complement(2268519..2270882)
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AA seq
787 aa
AA seq
DB search
MPSSKKPAPSLAKSVKSVATKPAAEKPLKAGAKPATKTAAAASKTAAATKVKPVPTKSTS
LDDPKKAAATATAAPAAKKVGRPPKAAGAAAAPATGAKRGRKPKAAKEAGESDIDLSDIE
EDLAGDEPAVVATTEEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLAKRRSRLKTLI
TLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETLLLNNTAPT
ATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMA
MMEAISASPATIAAILEMAATIREGKVVISTIVDGFSNPNEADDYVAEEDFDEFDEEDDD
DGKGGSKALTKKLEELKNEALARFDRIAEMFEKIHKIYEKEGYGTPAYTKAQQAVSDELM
TIRFTAKTIEKLCDLVRTQVDDVRKKERELRRIIVDKCGFPQDEFIRDFSGFDKNGNRIA
SNLLNLKWVEKQAAAGKPWSAVLARNIPPVQELQQKLTDIQSRVVVPLTELKDINKRMNE
GESSSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKM
EIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKL
RSFIDTL
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcccagttcaaagaagcctgctccttcacttgcaaaaagcgtcaaaagcgtcgccacc
aagcccgcagcagagaaaccgttgaaagccggtgccaaaccggcaaccaagacggctgcc
gccgcgtccaaaacggcagccgcaacgaaagtgaaacccgtgcccacgaaatcgacctct
ctcgacgatcccaagaaagccgcagccactgccacggctgcccccgctgccaagaaagtt
ggccgtccgcccaaggccgccggcgctgcagctgcgcccgccaccggcgccaagcgcggg
cgcaagcccaaggccgccaaggaagccggcgagagcgacatcgacctgtcggacatcgag
gaagacctggccggtgacgagcccgcggtcgtcgcgaccaccgaagagaaggtcaagccg
ctgcgcatgaagatcagcaaggcgaaggaacgcgccttgatgaaggagttcggcctcgac
gagaccgtgctctccgaagaagacctggccaagcgccgctcgcgcctgaagaccctgatc
acgctgggcaagacccgcggctacctcacgcacggcgaaatctccgaccacctgcccgac
aagctggtcgacgccgagaccatggaagtcgtggtcaccatgctcaacgacatgggcgtg
gcggtgtacgagcagacgcccgacgccgaaaccctgctgctgaacaacaccgcgcccacc
gccaccacggtggaagaagccgaagaagaagccgaagcggcgctctccacggtggacagc
gaattcggccgcacgaccgaccccgttcgcatgtacatgcgcgaaatgggcacggtcgag
ctgctgacgcgcgaaggcgaaatcgaaatcgccaagcgcatcgaaggcggcctgatggcc
atgatggaagccatttcggcctcccccgccaccatcgccgcgatcctcgagatggccgcg
accatccgtgaaggcaaggtcgtcatctcgaccatcgtcgacggcttctcgaaccccaac
gaggccgacgactacgtagccgaagaagacttcgacgaattcgacgaagaggacgacgac
gacggcaagggcggctccaaggccctgaccaagaagctcgaagagctcaagaacgaagcc
ctcgcgcgcttcgaccgcattgccgagatgttcgagaagatccacaagatctacgagaag
gaaggctacggcacgccggcgtacaccaaggcccagcaggccgtgtccgacgagctcatg
accatccgcttcacggccaagaccatcgagaagctgtgcgacctggtgcgcacgcaggtg
gacgacgtgcgcaagaaggaacgcgaactgcgccgcatcatcgtggacaagtgcggcttc
ccgcaggacgagttcatccgcgacttcagcggcttcgacaagaacggcaaccgcatcgcc
tcgaacctgctcaacctcaagtgggtcgagaagcaggccgccgccggcaagccctggagc
gccgtgctcgcgcgcaacatcccgccggtgcaggaactgcagcaaaaactcaccgacatc
cagtcgcgtgtggtggtgccgctgaccgagctcaaggacatcaacaagcgcatgaacgag
ggcgaatcgtcctcgcgcgatgccaagaaggaaatgatcgaggccaacctgcgcctcgtg
atctccatcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggaa
ggcaacatcggcctgatgaaggcggtcgacaagttcgaataccgtcgcggctacaagttc
tcgacgtacgccacgtggtggatccgccaggcgatcacccggtctatcgcggatcaagct
cgaaccatccgcatcccggtgcacatgatcgagacgatcaacaagatgaaccgcatctcg
cgccagcacttgcaggagttcggcttcgagcccgacgccggcatcctggccgccaagatg
gagatcccggaagacaagatccgcaagatcatgaagatcgcgaaagagccgatctcgatg
gaaacccccatcggcgacgacgacgattcgcacctgggcgacttcatcgaggacagcagc
aacacggcccccatcgaggccgccatgcaagccggcctgcgcgacgtggtcaaggacatc
ctcgactcgctcaccccgcgcgaagccaaggtgctgcgcatgcgtttcggcatcgaaatg
tccaccgaccacacgctggaagaagtcggcaagcagttcgacgtgacccgcgagcgcatc
cgccagatcgaagccaaggcgctgcgcaagctgaagcacccgtcgcgttccgacaagctg
cgcagcttcatcgacaccctgtaa
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