Variovorax sp. EBFNA2: RZE79_10695
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Entry
RZE79_10695 CDS
T10564
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vae Variovorax sp. EBFNA2
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vae03009
]
RZE79_10695 (rlmD)
Enzymes [BR:
vae01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RZE79_10695 (rlmD)
Ribosome biogenesis [BR:
vae03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RZE79_10695 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_11
TPMT
PCMT
Methyltransf_12
Methyltransf_23
MTS
Motif
Other DBs
NCBI-ProteinID:
WPG39779
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All DBs
Position
2310262..2311698
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AA seq
478 aa
AA seq
DB search
MTESIEEKKVPASPADEWLQVESLDLDAQGVSHKSDGMVVFIEGALPFEEVQFNVHRRKN
NWEQGTVTQIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHL
GKVKPENLLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQ
VSAMLMPLRALIGSMDARETCPQIELACGDAPGSTALGTIALVLRHLEPLSGADIGRLKA
FAAENEGVQWWLQAKGPDTVKLLEEGGTPLAYRLPAFGVTMPFKPTDFTQVNPHINRALV
GKALRLLDVQPEERVIDWFCGLGNFTLPLASQAREVLGIEGSDTLVARATENFKRNQPAT
PERRALSATQFVTRNLFEMTPEMLVADGSADKWLVDPPREGAFALAKAMADLHQQPELRA
NGWTPPKRIVYVSCNPSTLARDAGLLVHQSGYRCTFAGVVNMFPHTAHVESIAVFELE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatccatcgaagaaaagaaagtccccgcgagccccgccgatgaatggctccag
gtcgagtcgctcgacctggatgcgcaaggcgtttcacacaagtccgacggcatggtcgtg
ttcatcgagggcgcactgcctttcgaggaagtgcagttcaacgtccatcgccgcaagaac
aactgggaacaaggcacggtcacgcagatccgccgcgaatcctcgcagcgcgtgcgcccc
ggctgtccgcacttcggcctgcacacgggcgcgtgcggcggctgcaagatgcagcacctc
gacgccgcagcccaggtggcggtgaagcagcgggcgctcgaagacaacctctggcacctc
ggcaaggtcaagcccgagaacctgctgcgcccgttggaaggtccggcctggcactaccgc
taccgggctcggctgtcggtgcgccatgtggtcaagaagggcacagtgctgatcggcttc
cacgagcgcaagagccgctacctcgccgacatgcaggtctgccccgtgctgcccaagcag
gtcagcgccatgctgatgccgctgcgcgcgctgatcggctcgatggacgcgcgcgaaacc
tgcccgcagatcgagctggcctgcggcgacgcgccgggctcgaccgcgctgggcaccatc
gccctggtgctgcggcacctggagccgttgtcgggcgctgacatcgggcggctcaaggcc
tttgcggccgagaacgagggtgttcaatggtggctgcaggccaagggcccggacaccgtg
aagctgctggaagagggcggcacgccactggcctaccgcctgcccgcgttcggcgtgacg
atgccgttcaagccgaccgatttcacgcaggtcaacccgcacatcaatcgcgcattggtc
ggcaaggcgctgcgcctgctcgacgtgcagcccgaggagcgtgtgatcgactggttctgt
ggcctgggcaacttcacgctgccgctggcgagccaggcgcgcgaggtgctgggcatcgag
ggcagcgacacgctggtggcgcgcgcgaccgagaacttcaagagaaatcagcctgcaacg
cccgagcggcgcgcgctgtcagccacccagttcgtgacgcgcaacctgttcgaaatgacg
cccgagatgctggtggccgacggcagtgccgacaagtggctggtcgatccgccgcgcgaa
ggcgccttcgcgctggccaaggcgatggccgatctgcaccagcagcccgaacttcgcgcc
aatggctggacgccgccgaaacgcatcgtgtacgtgagctgcaacccgtcgacactggcg
cgcgatgccggcctgctggtccaccagtcgggctaccgctgcaccttcgcgggcgtggtg
aacatgttcccgcacacggcgcacgtcgagtcgatcgcggtcttcgagctggaatga
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