Variovorax sp. EBFNA2: RZE79_13270
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Entry
RZE79_13270 CDS
T10564
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vae Variovorax sp. EBFNA2
Pathway
vae03030
DNA replication
vae03430
Mismatch repair
vae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RZE79_13270 (dnaE)
03430 Mismatch repair
RZE79_13270 (dnaE)
03440 Homologous recombination
RZE79_13270 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vae03032
]
RZE79_13270 (dnaE)
03400 DNA repair and recombination proteins [BR:
vae03400
]
RZE79_13270 (dnaE)
Enzymes [BR:
vae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RZE79_13270 (dnaE)
DNA replication proteins [BR:
vae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RZE79_13270 (dnaE)
DNA repair and recombination proteins [BR:
vae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RZE79_13270 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WPG40275
LinkDB
All DBs
Position
2849543..2853061
Genome browser
AA seq
1172 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKP
VIGAEIFIDGLGKEPGALTRLILLVQSTEGYLNLSELLARAWTQNVSRGQSQAACKLEWL
QELQGGLIALSGAQAGPLGQPLLQGQEERAAELALQLAGMFPHRFYIELQRAGRPEDEPH
VIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVRKFTEEQYFK
SSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFIAEGVRMPIDEFFRQE
SFEGLEVRLKHLYPDEARRDAERPRYVERLEFEINTILNMGFPGYFLIVGDFIKWAKENG
CPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRVI
DYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQY
PPATKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAPG
KLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQE
NFAFENIPLNDGPTYRLFSDGKTEAVFQFESRGMQGMLKDARPTRLEDLIALNALYRPGP
MDLIPSFVARKHGREDVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLR
RAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFNKSHAAAYSLLA
YHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFNITFEPPDVNRGNYRFEPVT
NKIIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLYDFCVRIDRQRINKRTVEALIKAGA
FDAIQQNRASLIASVDRAFEFANATAANASQVDIFGDCEHGSATQEPDLVDATPWGVKER
LTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLLDSRDPQVIAGIVSDFRVINGQRGR
LAIFKLDDKSESIDATADEALINANRNTLKDDELVIVSGKLQPARGGFEARFQVQQVWDL
ASARCRFGKFLRVAVNGKVPEIARLLKDFPARTEQTEVGDLVHGLPVRLSMARGGAQVEL
QLGERAKFFPTDAALASWTAQADAGKAQVIYD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcacctgcgtctgcacaccgagttttccgtcgtcgatggcacgaatcgaatc
gacgaagtcatcaaggccgccgctgccgacaagcagcccgcattggccatcaccgacctg
aacaacctgttcggggcggtcaagttctacaagcagggccggggcaagggcgtcaagccc
gtcatcggcgctgaaatcttcatcgacgggctgggcaaggagcccggcgcgttgacccgc
ctcatcctgctggtgcagagcaccgagggctacctcaacctgtcggagctgctggcccgc
gcctggacgcagaacgtgagccgcggccagtcgcaggcggcctgcaagctcgaatggctg
caggagctgcagggcggcctgatcgcgctgtcgggcgcacaggccgggccgctgggccag
ccgctgctgcaaggccaggaagagcgcgccgccgaactggcgctgcagcttgcgggcatg
ttccctcaccgtttctacatcgagctgcaacgcgccggccgccccgaagacgagccgcac
gtgattgccgcggtgaagctcgcggcccgcctgaagctgccggtggtcgccacgcacccg
gtgcagttcgccgaacgccaggactacgaagcgcacgaggcgcgcgtgtgcatttccgaa
ggcgaaattctgggcaacccgcgccgcgtgcgcaagttcaccgaagagcagtatttcaag
tcgagcgccgagatgcaggcgctgttcgccgacgtgcccagcgcgctggccaacacggtc
gagatcgccaagcgctgcaacctcacgctggtgctcggcaaaccgcagctgcccgatttc
ccgacgcccttcattgccgaaggcgtgcgcatgccgatcgacgagttcttccgccaggaa
tcgttcgagggcctcgaggtgcggctgaagcacctgtaccccgacgaagccaggcgcgat
gccgaacggccgcgttatgtggagcgcctggagttcgagatcaacacgatcctgaacatg
ggcttccccggctacttcctgatcgtgggcgacttcatcaagtgggccaaggaaaacggc
tgtcccgtgggcccgggccggggctcgggtgcgggctcgctcgtggcctacgcgctgaag
atcaccgacctcgacccgctcgaatacaagctgctgttcgaacgtttcctgaaccccgaa
cgcgtctcgatgcccgacttcgacatcgacttctgccagggcaaccgggaccgcgtgatc
gactacgtgaaggacaagtacggccgcaacgccgtgagccagatcgccaccttcggcacc
atggccgcgcgcgcggccatccgcgacgtgggccgcgtgctcgacatgagctacatgttc
tgcgacggcatcagcaagctgattccgaacaagccgggcatgtcggtcacgctgcaatat
ccgcccgcgaccaagatcgagggcgacaagaacaactacgccatcgagatggagccgcag
ctggcggagcgcatcgagaaggaagaagaagtccgcatgctggtcgagctcgcgcagaag
ctcgaaggcatgacccgcaacatcggcatgcacgccggcggcgtgctcattgcgccgggc
aagctcaccgacttctgcccgctgtaccagcagcccggcagcgaatcggccgtgagccag
tacgacaaggacgacgtcgaagccatcggcctcgtgaagttcgacttcctgggtcttgcg
acgctcaccatcctggagattgcgcgcgagttcatcatgaagcgccacaagggccaggag
aacttcgcgttcgagaacatcccgctgaacgacgggccgacctaccgcctgttctccgac
ggcaagaccgaggccgtgttccagtttgaatcgcgcggcatgcagggcatgctgaaagat
gcgcggcccacgcgcctggaagacctgatcgcgctgaacgcgctgtaccgcccgggcccg
atggacctgattcccagcttcgtggcgcgcaagcacggccgcgaagacgtggagtacccg
cacccggccgtcgccgaaatgctctccgagacctacgggatcatggtctaccaggagcag
gtgatgcagaccgcgcagatcctgggcggctactcgctcggcggcgccgacttgctgcgc
cgcgcgatgggcaagaagaagctcgaggaaatggccgagcaccgcgagaaattccgcgcg
ggcgccctggccacgcacggcatcgtgcaggacaaggccgacgaaatcttcgacttgatg
gagaagttcgcgggctacggcttcaacaagtcgcacgccgccgcctactcgctgctggcg
taccacacgggctggctcaaggtccattacacggccgagttcttctgcgccaatatgacc
gtggaaatggacgacacggacaagctcaagctcttgttcgaagacgcccagaaaaacttc
aacatcaccttcgagccgccggacgtgaaccgcggcaactaccgcttcgagccggtcacc
aacaagatcattcgctacggcctgggcgccgtgaagggcacgggccagctcgcggtcgag
gccgtggtgcgggcgcgcgaagagggcgggccgttcaagagcctgtacgacttctgcgtg
cgcatcgaccgccagcgcatcaacaagcgcacggtcgaagcgctcatcaaggccggcgcg
ttcgacgccatccagcagaaccgcgcgtcgctcattgcctcggtcgaccgcgccttcgag
ttcgccaacgccacggcggccaatgcgtcgcaggtcgacatcttcggcgactgcgaacac
ggctcggccacgcaggagcccgacctcgtcgacgccacgccctggggcgtgaaagagcgc
ctgaccttcgagaaaaccgccgttggcttctacctgtcgggccacctgttcgacgaggtg
gcgcacgaggtgcggcgcttctgcaagcgcgagatcggcgacctgctcgacagccgcgac
ccgcaggtcattgccggcatcgtgagcgacttccgcgtcatcaacggccagcgcggccgg
ctggcgatcttcaagctcgacgacaagtcggagtcgatcgacgccacggccgacgaggcg
ctcatcaacgccaaccgcaacacgctgaaggacgacgagctcgtcatcgtgagcggcaag
ctgcagcccgcacgcggtggcttcgaggcgcgcttccaggtgcagcaggtctgggacctg
gcctcggcgcgctgccgcttcggcaagttcctgcgcgtggcggtcaacggcaaggtgccc
gagatcgcgcgcctgctgaaagactttccggcgcgcaccgagcagaccgaggtcggcgac
ctcgtgcacggcctgcccgtgcgcctgtcgatggcgcggggcggggcgcaggtcgagctg
caactgggcgagcgcgccaagttcttcccgaccgatgcggcgcttgcgagctggaccgcg
caggccgatgccggcaaggcgcaggtcatctacgattga
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