Variovorax sp. EBFNA2: RZE79_15980
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Entry
RZE79_15980 CDS
T10564
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vae Variovorax sp. EBFNA2
Brite
Enzymes [BR:
vae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RZE79_15980 (hrpA)
Messenger RNA biogenesis [BR:
vae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RZE79_15980 (hrpA)
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NCBI-ProteinID:
WPG40738
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Position
complement(3415935..3419717)
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AA seq
1260 aa
AA seq
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MAAIAAHQVVIVCGETGSGKTTQLPKIALALGRGKLNAEPGKGRLIGHTQPRRIAASSVA
KRIAEELKTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLIIDEA
HERSLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFAQHFASAKGPAPTIMVSGRTFP
VEQRYRPFEESREHDLNDAIADAVDELWRDPHNAGDILIFLPGEREIREAADHLRRHVSH
QPLFRNAEVLPLFARLSGPEQDRIFESHHGRRIVLATNVAETSLTVPGIRYVIDTGTARV
KRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEKDFAGRPRFTDPEILRS
SLAGVILRMKSLRLGDVARFPFLEAPSPRAIADGYQLLNELGAVDDANELTATGGELAKL
PLDPRVGRMILEARTRGALEEVLIIASALSVQDVRDRPMEAQQQADQAHSKFDDEKSEFS
GYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQNFINIRRVREWRDIHSQLLTVVTEHKW
RINATPAGYEPLHLSMLAGLLGNVGWKLEDDEAYLGARGIKFYKHPGAHLKKKPGRWIVA
AELVETTRLFGRGIANIEPQWLEQVAEHLLKKQLLDPHWEKKGAQVSALERATLYGLVVY
SGRRVDFTKVDPVSAREIFIREALVGGQWESKFPFLTANRKLVREVEGLEHKARRQDVLV
DDELIFAFYDAQLPADVASGITFENWYRHASKDQPRLLYLTRDELMRHQAAGITTQSFPP
TLRLGGVDCAASYLHEPGDAKDGLTVSVPLFVLNQVNEERCEWLVTGMLKDKIQALLKSL
PQRPRSRLVPLPESATKLAEELSAPELFGTGSLTDVLLKRVRDMTSIDVKRADFKLDMLP
PHLFMNLRIVDEHGRQLGMGRNLGALKAELGAQARGAFQALAGLNVKASPTAKAAPAAEG
QAPAKNAAPEKATPALPAGQRYTTWAFGELPELMEVRRGSQSLIGFPALRDEGDAVTIEV
FDEPAVAAAKHRAGLRRLFALQLKDALKYLEKNIPDLQKMSVAYMPLGTSEELRTQIIDV
AVDRAFLQEPLPTDEFAFKKRLEEGRGRLTLIANEVARLAGVILVEYAAAARKIKDTKIQ
PEAVQDAAQQLQKLVGKRFIADAPWTQLQHFARYLKAIVLRLDKLRADPARDAAKLAELK
PQEQRYWRLVAERKGVVDDRMLEFRWLLEELRVSFFAQELRTPQPVSVKRLDKAWAQLQA
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggccgccatcgcggcgcaccaggtcgtgatcgtctgcggcgaaacgggctcgggcaag
accacgcagctgccgaagatcgcgctggcgctcgggcgcggcaagctaaacgccgagccc
ggcaagggccgcctcatcggccacacgcagccgcgccgcattgccgcaagctcggtcgcc
aagcgcatcgccgaagagctgaagacgccgctgggcgatgtggtcggcttcaaggtgcgc
tttcaggatcggctgagccgcgacgcctcggtgaagctgatgaccgacggcatcctgctg
gccgagacgcagaccgatccgctgctgaaggcctacgacacgctaatcatcgacgaggcc
cacgagcgctcgctgaacatcgacttcctgctcggctacctgcgcgagattcttccgcgc
cggcccgacctgaaggtgatcgtcacctcggccaccatcgatgccgaccgcttcgcgcag
cacttcgcctcggccaaaggccccgcgccgacgatcatggtgtcgggccgcaccttcccg
gtcgagcagcgctaccggccgttcgaagagtcgcgcgagcacgacctgaacgacgccatt
gccgacgcggtcgacgagctctggcgcgacccgcacaacgcgggcgacatcctgatcttc
ctgcccggcgaacgcgagattcgcgaggccgccgaccacctgcgccgccacgtcagccac
cagccgctgttccggaatgccgaggtgctgccgctgttcgcgcggctgtctggccccgag
caggaccgcatcttcgaaagccaccacggccggcgcatcgtgctggctaccaacgtggcc
gagacctcgctcaccgtgccgggcatccgctacgtgatcgacaccggcacggcgcgcgtc
aagcgctacagcttccgcagcaaggtcgagcagctgctggtcgagccgatcagccaggcc
gcggccaaccagcgcgcaggccgatgcgggcgtgtggcgaacggcatctgcatccgcctg
tacgacgagaaggactttgcggggcgcccgcgcttcaccgatccggaaattctgcgttcg
tcgcttgcgggcgtgatcctgcgcatgaagtcgctgcggctgggcgacgtggcgcgcttt
ccgttcctcgaagcgccatcgccgcgtgcgattgccgacggctaccagctgctgaacgaa
ctcggcgcagtcgacgacgccaacgaactcacggccaccggcggcgaactggcgaagctg
ccactcgatccgcgcgtcggccggatgatcctggaagcgcgcacgcgcggcgcgctcgaa
gaagtgctcatcattgcctcggcgctcagcgtgcaggacgtgcgcgaccggccgatggag
gcgcagcagcaggccgaccaggcgcactcgaaattcgacgacgagaagagcgagttcagc
ggctacctgcggctgtggaagtggatcgccgacgcgcgcggcggccacggcgacacgcac
aagctcagcaaccgccagtacgagcagctgctgcgccagaacttcatcaacatccgccgc
gtgcgcgaatggcgcgacatccattcgcagctgctcacggtggtcaccgagcacaagtgg
cgcatcaacgccacgccggccggctacgagccgctgcacctgtcgatgctcgcgggcctg
ctcggcaacgtcggctggaagctcgaggacgacgaggcctacctcggcgcgcgcggcatc
aagttctacaagcaccccggcgcgcacttgaagaagaagcccgggcgctggatcgtcgcg
gccgagctggtcgagaccacgcggctgttcgggcgcggcatcgccaacatcgagccgcag
tggctcgagcaggtggcggagcatctgctgaagaagcagctgctcgatccgcactgggag
aagaagggcgcgcaggtctcggcgctggagcgcgcgacgctgtacggcctggtggtctac
agcggtcggcgcgtcgatttcaccaaggtcgatccggtctcggcgcgcgagatcttcatc
cgcgaagcgctggtcggcggccagtgggaaagcaagttcccgttcctcacggccaaccgc
aagctggtgcgcgaggtcgaaggcctggagcacaaggcgcgccggcaggacgtgctggtc
gacgacgaactgatcttcgccttctacgacgcgcagctgccggccgacgtggccagcggc
atcaccttcgagaactggtaccgccacgcgtcgaaggaccagccgcggctgttgtatctc
acgcgcgacgagctgatgcgccaccaggcggccggcatcacgacgcagtcgttcccgccc
acgctgcgtctgggcggcgtcgattgcgccgcgagctacctgcatgaaccgggcgatgcg
aaagacggcctcacggtcagcgtgccgctgttcgtgctcaaccaggtgaacgaagagcgc
tgcgagtggctggtgaccggcatgctcaaggacaagatccaggcgctgctcaaaagcctg
ccgcagcgcccgcgctcgcggctggtgccgctgcccgagtcggcgacgaagctggccgag
gaactgtcggcgcccgaactcttcggcaccggttcgctcaccgacgtgctgctcaagcgc
gtgcgcgatatgaccagcatcgacgtgaagcgtgccgacttcaagctcgacatgctgccg
ccgcacctcttcatgaacctgcgcatcgtcgacgagcacggccgccagctcggcatgggc
cgcaacctcggcgcgctgaaggcggagctgggcgcgcaggcgcgcggtgcgttccaggcg
ctcgcggggctcaacgtgaaggcgtcgccgaccgccaaggctgcgcctgcagccgaaggc
caggcgcctgcgaagaacgctgcgcccgagaaggccacgcccgcgctgcccgccggccag
cgctacacgacctgggctttcggcgagctgcccgagctgatggaagtgcggcgcggttcg
cagtcgctcatcggcttcccggcgctgcgcgacgagggcgatgccgtgaccatcgaggtg
ttcgacgagcccgccgtggccgccgcgaagcaccgcgccggcctgcgccgcctgttcgcg
ctgcagctgaaggacgcgctcaagtacctcgagaagaacatccccgacctgcagaagatg
tcggtcgcctacatgccgctgggcacgtcggaagagttgcgcacgcagatcatcgacgtg
gcggtcgaccgcgcgttcctgcaggagccgctgccgaccgacgagttcgccttcaagaag
cggctcgaagaagggcgcgggcggctcacgctgatcgccaacgaagtggcacggctcgcg
ggcgtcatcctcgtggagtacgcggcggctgcgcgcaagatcaaggacacgaagatccag
cccgaggcggtgcaggacgcggcgcagcagctgcagaagctcgtcggcaagcgcttcatc
gccgacgcgccgtggacgcagctgcagcacttcgcgcgctacctcaaggccatcgtgctg
cgtctggacaagctgcgtgccgaccccgcgcgcgacgccgccaagctggccgagctgaag
ccgcaggagcagcgctactggcgcctcgtggccgagcgcaagggcgtggtggacgaccgc
atgctcgagttccgctggctgctcgaggaactgcgcgtgagctttttcgcgcaggagctg
cgcacgccgcagccggtgagcgtgaagcggctcgacaaggcctgggcgcaactgcaggcg
taa
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