KEGG   Variovorax sp. EBFNA2: RZE79_17395
Entry
RZE79_17395       CDS       T10564                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vae  Variovorax sp. EBFNA2
Pathway
vae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RZE79_17395 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vae03021]
    RZE79_17395 (rho)
   03019 Messenger RNA biogenesis [BR:vae03019]
    RZE79_17395 (rho)
Transcription machinery [BR:vae03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RZE79_17395 (rho)
Messenger RNA biogenesis [BR:vae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RZE79_17395 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA S1CSD-TOTE-2 Spore_III_AA
Other DBs
NCBI-ProteinID: WPG35264
LinkDB
Position
3688616..3689881
AA seq 421 aa
MHLNELKALHVSEVFKQAEALEIENIGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
DGAPEANKHKVMFENLTPLFPKEQMKLEREGVKGEENLTGRIIDIIAPIGKGQRALLVAP
PKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH
VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR
FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ
LNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacttaaacgaactcaaggcactccacgtgtctgaagtcttcaagcaggctgaggcg
cttgaaatcgaaaacatcggccgcatgcgcaagcaggagctgatgttcgcgatcatcaag
aagcgcgccaaggccggcgaacaggtcttcgccgacggcgtgctcgaaatcctgcccgac
ggcttcggcttcctgcgcagtcccgacaccagcttcacggccagcaccgacgacatctac
atctcgcccagccaggtgcggcgcttcaacctgcacaccggcgacatgatcgaaggtgaa
gtgcgcacgcccaaggacggcgagcgctactttgcactgaccaagctcgacaaggtcaac
gacggcgcacccgaagccaacaagcacaaggtgatgttcgagaacctgacgccgctgttc
cccaaggaacagatgaagctggagcgcgaaggcgtcaagggcgaagagaacctcaccggc
cgcatcatcgacatcatcgcccccatcggcaaaggccagcgcgccctgctcgtggcaccg
cccaagagcggcaagacggtgatgatgcagcacatcgcccacgcgatcagcgccaactac
cccgacgtgcacatgatggtgctgctcgtggacgagcgccctgaagaagtgaccgaaatg
cagcgcacggtgaagggcgaagtcattgcttcgaccttcgacgagcccgcagcgcgccac
gtgcacgtcgccgaaatggtgatcgagcgcgccaagcgcctggtcgagctcaagaaggac
gtggtgatcctgctggactccatcacccgtctggcccgcgcctacaacaacgtcgtaccc
tcgtcgggcaaggtgctgaccggcggtgtcgactccaacgcgctgcagcgtcccaagcgc
ttcctgggcgctgcgcgcaatgtggaagaaggcggctcgctgaccatcatcggcaccgcg
ctgatcgacaccggcagccgcatggacgaagtgatcttcgaagagttcaagggcaccggc
aactccgaaatccacttggaccgccgcctgtacgaaaagcgcgtgttcccgtcgatccag
ctcaaccgcagcggcacgcgccgcgaagagttgctgctggcgcccgagatccttcaaaag
acccgcatcctgcgtcagctcatgtacaacatggacgagatcgagtcgatggagctgatg
ctcaagaacatgaaggcgaccaagaccaatgtcgagttcttcgacatgatgcgtcgcggc
ggctga

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