Variovorax sp. EBFNA2: RZE79_20655
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Entry
RZE79_20655 CDS
T10564
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vae Variovorax sp. EBFNA2
Pathway
vae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZE79_20655 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vae03019
]
RZE79_20655 (pnp)
03016 Transfer RNA biogenesis [BR:
vae03016
]
RZE79_20655 (pnp)
Enzymes [BR:
vae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RZE79_20655 (pnp)
Messenger RNA biogenesis [BR:
vae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RZE79_20655 (pnp)
Transfer RNA biogenesis [BR:
vae03016
]
Prokaryotic type
tRNA degradation factors
RZE79_20655 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_TP0910
S1_RRP5
KH_2
OB_RRP5_4th
OB_PDCD11
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WPG35891
LinkDB
All DBs
Position
complement(4382805..4385132)
Genome browser
AA seq
775 aa
AA seq
DB search
MSLFNKITKSFQWGDKTVVMETGEVARQANGAVLVDIDGTVILATVVASKSAKPGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFLNEVHVVIHTV
SLNPEVDADIAAMIGVSAALSISGIPFSGPIGAARVGYINGQYVLNPGQTARKDSQMDLV
VAGTQAAVLMVESEAQQLSEEIMLGGVVFGHEQANIAINAIHDLVRDAGKPVWDWQAPAE
DEAFVAKVKGLAEEKLRAVYQIRSKQARTQALREANASVMASLKEGGEPFDAGKVNDLLF
SIESKIVRSQILSGEPRIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVITTLGT
ERDAQRIDALAGEYEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKEDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKAEVSSFAPRLTTLKINPEKIRDVIGKGGSVIRGLQEETGTTINIDEDGTITIA
STDPEKAEFAKRRIEQITAEVEIGKVYEGPVTKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVLETDEKGRVKLSMKALTERPAGMEYSERPPREDRGDRGDRGG
DRRERSDRGDRGGDRGGDRGERAPRFNDQQQQPRGEQQQQPAGESQQQAPREPQE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcttcaacaaaatcaccaagtccttccaatggggcgacaagaccgtcgtcatg
gaaacgggcgaagtcgcccgtcaggccaatggcgccgtgctggtcgacatcgacggcacc
gtgattctggccactgtggtcgcctccaagtccgccaagcccggccaagacttcttcccg
ctgaccgtcgattacatcgagaagacctacgctgcgggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgagcacgaaacgctgacgagccgcctgatcgaccgcccg
atccgcccgctgttccccgaaggtttcctgaacgaagtgcacgtggtgatccacaccgtg
tcgctcaaccctgaagtcgacgccgacatcgccgccatgatcggcgtgagcgccgcgctg
tcgatctccggcatcccgttcagcggcccgatcggtgccgcccgcgtgggctacatcaac
ggccagtacgtgctgaatccgggtcagacggcccgcaaggattcgcagatggacctcgtc
gtcgccggcacgcaagctgccgtgctgatggtcgaatccgaagcccagcaactgagcgaa
gaaatcatgctcggcggcgtggtgttcggccacgaacaagccaacatcgcgatcaacgcg
atccatgacctcgtgcgcgacgccggcaagccggtgtgggactggcaggcacctgccgaa
gacgaagccttcgtcgccaaggtcaagggcctggccgaagaaaagctgcgcgctgtctat
caaattcgcagcaagcaagcccgcacgcaagcactgcgcgaagccaatgccagcgtgatg
gcatcgctgaaggaaggcggcgagcctttcgacgccggcaaggtcaacgacctgctgttc
tcgatcgaatcgaagatcgttcgcagccagatcctgtcgggtgagccccgcatcgacggc
cgcgacacgcgcaccgtgcgtcccatcgagatccgcaactcggtgctgccccgcacccac
ggctcggcgctgttcacgcgcggtgaaacgcaggcgctggtcatcaccacgctgggcacc
gaacgcgacgcacagcgcattgacgcgctggccggcgagtacgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggtgaagtgggccgcatgggctcgaccaagcgc
cgcgaaatcggccacggccgcctggccaagcgcgcgctcgtcgccgtgctgccgaccaag
gaggaattcccgtacaccattcgcgtggtgtcggaaatcaccgaatcgaacggctcctcg
tcgatggcttcggtctgcggcggctgcctctcgatgatggacgccggcgtgcccatgaag
gcgcacgtggccggtatcgccatgggcctgatcaaggaagacaaccgcttcgcagtgctg
accgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtggccggcacg
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgcactggcgcaagccaaggaagcgcgcatgcacatcctgggcaagatgcaa
gaagcgatgggcgaggccaaggccgaagtctccagcttcgcgccgcgcctgaccacgctg
aagatcaatcccgagaagatccgcgacgtgatcggcaagggcggctcggtcatccgtggc
ctgcaggaagaaaccggcacgacgatcaacatcgacgaagacggcaccatcaccatcgcc
tcgaccgatccggaaaaggcagagttcgccaagcgccgcatcgagcagatcaccgctgaa
gtcgaaatcggcaaggtctacgaaggcccggtcaccaagatcctggacttcggcgcgctc
atcaacctgctgcccggcaaggacggcctgctgcacatcagccagatcgcgcacgagcgc
gtcgagaaggtgaccgactatctgagcgaaggccagatcgtgaaggtcaaggttctcgag
acggacgaaaagggccgcgtcaagctgtccatgaaggccctgaccgagcgtccggccggc
atggaatacagcgagcgcccgccgcgtgaagaccgtggcgatcgcggtgaccgtggtggc
gaccgccgtgagcgttcggaccgtggcgatcgcggcggcgaccgtggtggtgatcgtggc
gagcgcgcaccgcgcttcaacgaccagcagcaacagccccgcggcgagcagcaacagcag
cccgctggcgagtcgcagcagcaagccccgcgcgaaccgcaggagtaa
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