Variovorax sp. EBFNA2: RZE79_21820
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Entry
RZE79_21820 CDS
T10564
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vae Variovorax sp. EBFNA2
Pathway
vae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RZE79_21820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vae03019
]
RZE79_21820
Enzymes [BR:
vae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RZE79_21820
Messenger RNA biogenesis [BR:
vae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RZE79_21820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
WPG36115
LinkDB
All DBs
Position
4632527..4634356
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AA seq
609 aa
AA seq
DB search
MNFDELKLAPAILKAVLEHGYDTPTPIQAQAIPVVLDGHDLLGGAQTGTGKTAAFTLPML
HKLTMSRSATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNSQ
ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQILILDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLAGSLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IINEHKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ
EIERFTKQTIPVQKVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSREVMQAAAKAARTEM
MSRIRENKAGQGGGERAGGGGGGGNGGGQRRGGGQGGGGQGRNANGGGQGQGQGPRGQGA
ARPAQGRGPQQGQPRAPQQPHHHTPHEERQPRHHGNSHSPTQANQVAHLRAEAVAGGGAA
GQPDPLRTSVDHMGGRGRGGRPGGGGGGGYGGNRSGGGGRSGGGGGYGGGGGGGNRSGGG
GGGGRSFGR
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgacgaactgaagctggccccggccatcttgaaggctgtgctcgaacacggc
tacgacacccccacccccatccaggcacaagccattcccgtggtcctcgacggccacgac
ctgctgggcggcgcccagaccggcaccggcaagaccgcggccttcaccctgccgatgctg
cacaagctcaccatgagccgcagcgcaaccaacaagttcggcggcatcggcatccgtgcc
ctcgtgctgacccccacgcgtgaactcgcggcccaggtcgaagagtcggtgcgcacctac
ggcaagtacctgcagctcgactccaccgtgatcttcggcggcgtgggcatgaactcgcag
atcagcaagctcaagaagggtgtcgacatcctcgtggccacccccggccgcctgctcgac
ctgcaacagcaaggcatgctcgacctgagccaggtccagatcctcatcctggacgaagcc
gaccgcatgctggacatgggcttcatccacgacgtgaagaagatcctggccctggtgccc
aaggaaaagcagagcctgctgttctcggccaccttcagcgacgagatccgcgacctcgcc
ggctcgctgctcaagaacccgcaaagcatccaggtcacaccgcgcaacaccacggtgcag
cgcatcacgcaggtgatccatcctgtgggccgcggcaagaagaaggcgctgctcgcgcac
atcatcaacgagcacaagtggagccaggtcctcgtgttcacgcgcaccaagttcggcgcc
aacagcgtggccgagttcctcaccaagaacggcatcgaggcgatggcgctgcacggcaac
aagagccagagcgcccgcacgcaggcactggccggcttcaagagcggcgacatccgcgcg
ctggtggccaccgacatcgcggcccgcggcatcgacatcgacgagctgccgcacgtcgtg
aactacgaaatcccgaacgtcagcgaagactacgtgcaccgcatcggccgcaccggccgt
gccggttcgagcggcgaggccgtgagcttcgtgtgcctggacgaagaaggcttcatgcag
gaaatcgaacgcttcaccaagcagacgattccggtgcagaaggtcgagggcttcggtcct
gaagaaggcgaacgcgccgagccgatcgccatgggtcgccagacgatctggggcggcgcc
ggccgtccgccgagccgcgaagtgatgcaggcagccgccaaggccgcccgcaccgaaatg
atgtcgcgcatccgcgagaacaaggccggccagggtggcggcgaacgcgctggcggcggt
ggtggtggcggcaacggcggcggtcaacgccgcggtggcggccagggcggcggcggtcaa
ggccgcaatgccaacggtggcggccaaggccagggccagggtccgcgcggccagggcgca
gcccgtcccgcacaaggtcgcggcccgcaacaaggccagccgcgcgcaccgcagcagccg
catcaccacacgccgcatgaagagcgccaaccgcgccatcacggcaacagccacagcccg
acgcaggccaaccaggtcgcgcacctgcgcgctgaagccgtcgcaggcggcggcgcggcc
ggccagccggatccgttgcgcacgagcgtcgaccacatgggtggtcgcggtcgcggcggt
cgcccgggtggcggcggcggtggtggctacggcggcaaccgttccggtggcggtggccgc
tcgggtggtggcggtggctacggcggcggtggtggtggcggcaaccgctccggcggcggt
ggcggcggcggtcgttcgttcggtcgctga
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