Variovorax sp. EBFNA2: RZE79_24335
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Entry
RZE79_24335 CDS
T10564
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vae Variovorax sp. EBFNA2
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vae03032
]
RZE79_24335
03400 DNA repair and recombination proteins [BR:
vae03400
]
RZE79_24335
Enzymes [BR:
vae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RZE79_24335
DNA replication proteins [BR:
vae03032
]
Prokaryotic type
DNA Topoisomerases
RZE79_24335
DNA repair and recombination proteins [BR:
vae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RZE79_24335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WPG36585
LinkDB
All DBs
Position
5180656..5181822
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AA seq
388 aa
AA seq
DB search
MPSMQTPCRPAPASALPLARGLVYVNPGMPGIRRLKWGDSFRYRDAQGRWVRDADTLARI
RSLAIPPAYTDVWICPLPHGHLQATGLDARGRLQYRYHPDWRALQDGTKFERLEAFGRAL
PRLRARVARDLRAGTKTPGRAQVIATLVRLLDTTLLRVGNEAYASSNGSFGLTTLRNRHA
AVQGSALRLRFRGKSGVAHEARVDDPRVARVVRQCQQLPGQALFQYTDEAGEVRGVSSND
VNDYIAEATDSGDGERFTAKDFRTWHGTVQALELTRLACAWEGEERRPGARDILAAVARQ
LGNTPAVCKKAYVHPAVLALGETLAREDDTAVTGTLLEKIAARAATAGPARGLVAAERRL
LAFLRAKRRPAQPAARPKRTVSASSTTA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgatgcaaaccccatgccggcccgcaccggcgtccgccctgcccctggcccgc
ggcctggtctacgtgaaccccggcatgccgggcatccgccgcctgaagtggggcgacagc
tttcgctaccgcgacgcgcaaggccgctgggtgcgcgacgccgacacgctcgcgcgcatc
cgcagcctggcgattccgccggcctacaccgacgtgtggatctgcccgctgccccatggc
cacctgcaggccacgggcctggatgcgcgcggccggctgcaataccgctaccaccccgac
tggcgcgcgctgcaggacggcaccaagttcgagcgcctcgaagccttcgggcgcgccctg
ccccgcttgcgtgcgcgcgtggcgcgcgacctgcgcgccggcacgaagacccccgggcgt
gcgcaggtcatcgccacgctggtgcggctgctcgacaccaccttgctgcgcgttggcaac
gaggcctacgcgagcagcaacggatcgttcgggctcaccacgctccgcaatcgccacgcg
gcggtgcagggctcggcgctgcggctgcgctttcgcggcaagagcggcgtggcgcacgag
gcgcgcgtcgacgacccgcgcgtggcccgcgtggtgcgccagtgccagcagctgccgggc
caggcgctgttccagtacacggacgaggcgggcgaggtgcgcggcgtgtcgtccaacgac
gtgaacgactacatcgccgaagccaccgacagcggcgacggcgagcgcttcaccgccaag
gacttccgcacctggcacggcacggtgcaggcgctggaactcacgcggctggcctgcgcg
tgggaaggcgaagagcgccggcccggcgccagggacatcctcgcggccgtcgcgcggcag
ctcggcaacacgccggcggtctgcaagaaggcgtacgtgcatcccgccgtgctggccctg
ggcgagacactcgcacgcgaggacgacacggcggtcaccggcacgctgctggagaagatc
gcggcgcgcgcggcgaccgctggcccggcccgcggactggtcgcggcggagcggcgattg
ctcgccttcctgcgcgcgaaacgccgcccggctcagccggccgcgaggccgaagcgcacg
gtgtcggcgtcgagcaccacggcatag
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