Variovorax sp. EBFNA2: RZE79_25740
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Entry
RZE79_25740 CDS
T10564
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vae Variovorax sp. EBFNA2
Brite
KEGG Orthology (KO) [BR:
vae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vae03016
]
RZE79_25740
Enzymes [BR:
vae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RZE79_25740
Transfer RNA biogenesis [BR:
vae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RZE79_25740
Prokaryotic type
tRNA splicing ligases
RZE79_25740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WPG36850
LinkDB
All DBs
Position
complement(5462429..5463658)
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AA seq
409 aa
AA seq
DB search
MEQKTNYKVHEVANGVPVKMWTNGVPVEDEAQKQLENAARLPIVFKHIAAMPDVHYGIGA
TVGSVIPTFKAIIPAAVGVDIGCGMMACKTTLNARDLPDNLGPLRSAIEKAVPHGSNPKR
MGRDKGSWETPPDETDAAWAELVDEFDLICEDHPRIKNTNNHKHLGTLGTGNHFIEVCLD
EAGAVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAQYFGDYVRA
VGWAQKFARANREVMMQRVVAAARKVITKPFEAHVEAVNCHHNYVSRETHFGQDVLVTRK
GAVSAKLGELGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFTVADQIA
ATEGVECRKDADVIDEIPMAYKDIDAVMDAQKDLVEVVYTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaagacgaactacaaggtgcatgaagtcgccaacggcgttcccgtgaagatg
tggacgaacggcgtgccggtggaagacgaagcgcagaagcaactcgagaacgccgcgcgc
ctgcccatcgtgttcaagcacatcgcggccatgcccgacgtgcactacggcatcggtgcg
accgtgggctcggtgatcccgaccttcaaggccatcatccccgccgccgtcggcgtggac
atcggctgcggaatgatggcctgcaagaccacgctcaacgcacgcgacctgcccgacaac
ctgggcccgctgcgttcggcgatcgagaaggccgtgccgcacggatcgaatcccaagcgc
atgggtcgcgacaagggatcatgggaaacgccccccgatgaaaccgacgccgcctgggcc
gagctcgtggacgagttcgacctgatctgcgaggaccacccgcgcatcaagaacacgaac
aaccataagcacctgggaacgctgggtaccggcaaccatttcatcgaggtgtgcctcgat
gaagcgggcgcggtgtggttcatgctgcactcgggttcgcgtggcgtgggcaatgccatc
ggcacgcacttcatcgaactcgcgaagaaggatgccgagctgcaccagcgcaacctgccc
gatcaggacctggcgtacttcgaggaaggcgcccagtacttcggcgactacgtgcgcgcg
gtgggctgggcccagaagttcgcacgggcgaaccgcgaagtgatgatgcagcgtgtggtc
gcggccgcgcgcaaggtcatcaccaagccgttcgaggcgcacgtggaagcggtgaactgc
caccacaactacgtgagccgcgagacgcacttcgggcaagacgtgctcgtgacccgcaag
ggcgcggtgagtgccaagctcggcgagctggggatcatccccggcagcatgggcgccaag
agctacatcgtgcgcggcaagggcaaccccgagagcttcatgagctgcagtcacggtgcc
ggtcgaaagatgagccggacgaaggccaagaagctcttcaccgtcgccgaccagatcgcc
gcgaccgaaggcgtcgaatgccgcaaggacgccgacgtgatcgacgagattccgatggcc
tacaaggacatcgacgcggtgatggatgcgcagaaggacctggtggaggtggtttacacg
ctcaagcaggtggtttgcgtgaagggttga
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