KEGG   Variovorax sp. EBFNA2: RZE79_29180
Entry
RZE79_29180       CDS       T10564                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
vae  Variovorax sp. EBFNA2
Brite
KEGG Orthology (KO) [BR:vae00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vae02044]
    RZE79_29180 (tssC)
Secretion system [BR:vae02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   RZE79_29180 (tssC)
SSDB
Motif
Pfam: VipB VipB_2 Sox_N
Other DBs
NCBI-ProteinID: WPG37509
LinkDB
Position
complement(6199590..6201092)
AA seq 500 aa
MTAQALSASSGASSSQVSSEATVDLLDQIVEQSKVAKSDVEHTRTKDLIGELVSQVLEGS
VIVSDNVSAMIDARVADLDALISAQLSAVMHAPEFQKLESTWRGLEYLVKETPTGTMLKI
KVINATKRDLIRDFKAAVEFDQSAMFKKVYEEEFGTFGGAPFGALVGDFDVTRQPEDMYF
LDQMAHVAAAAHAPFIGAASPELLGLESFSDLGKPRDMAKVFDTVEYAKWKSFRDSEDSR
YVGLTLPRFLGRLPYHPRDGTVVDSFNFVEDVDGTDHAKYLWCNAAWAFATRLTAAFDDF
GWCAAIRGVEGGGLVEDLPTHTFKTDEGEIALKCPTEIAITDRREKELSDLGFIPLVHCK
NSDYAAFFGAQSLQKAKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFAS
AHNVEQFLNRWIAQYVLLDDNATQEQKAQFPLREAAIQVGEVPGRPGVYRAVAFLRPHFQ
LDELSISLRLVADLPKSVNK
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgactgcgcaagcactatcggcatcgagcggtgcctcttcgtcccaggtttcgtctgaa
gccacggtcgacctgctcgaccagatcgtcgagcagagcaaggtcgccaagtccgacgtg
gaacacacgcgcaccaaggacctgatcggcgaactggtcagccaggtcctcgagggctcg
gtgatcgtctcggacaacgtgtcggccatgatcgacgcccgcgtggccgacctcgacgcc
ctcatctccgcgcagctcagcgccgtgatgcacgcgcccgagttccagaagctcgagagc
acctggcgcggcctggagtacctggtcaaggaaacgccgaccggcacgatgctcaagatc
aaggtcatcaacgccaccaagcgcgacctgatccgcgacttcaaggccgccgtcgagttc
gaccagagcgcgatgttcaagaaggtctacgaagaagagttcggcaccttcggcggtgcg
ccgttcggcgcgctggtgggcgacttcgacgtcacgcgccagcccgaagacatgtacttc
ctggaccagatggcgcacgtggcggctgccgcccacgcgcccttcatcggcgccgcctcg
cccgagctgctgggcctggagagcttctccgacctgggcaagccgcgcgacatggccaag
gtgttcgacaccgtcgaatacgccaagtggaagtcgttccgcgattcggaagactcgcgc
tacgtcggcctcacgctgccgcgctttctcggccgactgccctaccacccgcgtgacggc
acagtcgtcgacagcttcaacttcgtcgaagacgtcgacggcaccgaccacgccaagtac
ctctggtgcaacgccgcctgggccttcgccacacgcctcacggccgcgttcgacgacttc
ggctggtgcgcggccatccgcggtgtcgaaggtggtggcctggtcgaagacctgcccacg
cacaccttcaagaccgacgaaggcgagatcgccctcaagtgcccgaccgaaatcgccatc
accgaccggcgcgagaaagagctcagcgacctgggcttcattccgctcgtgcactgcaag
aactccgactacgcggcgttcttcggcgcgcagtcgctgcagaaggccaagaagtacaac
accgacagtgccaacgccaacgccgtgctgtcggcgcagctgcagtacatcttctcggtg
tcgcgcatcgcgcactacctcaaggccatgatgcgcgacaagatcggcagctttgcctcg
gcgcacaacgtcgaacagttcctgaaccgctggatcgcgcagtacgtgctgctcgacgac
aacgcgacgcaggaacagaaagcccagttcccgctgcgcgaagccgccatccaggtcggc
gaagtgcccgggcggcccggcgtgtaccgcgcggtcgcgttcctgcgcccgcatttccag
ctggatgaactgtctatttcactgcgcttggtcgccgatctgccgaagtcagtgaataag
taa

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