Vibrio aestuarianus: MCL31_05855
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Entry
MCL31_05855 CDS
T11937
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vaes Vibrio aestuarianus
Pathway
vaes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vaes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCL31_05855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vaes03021
]
MCL31_05855 (rpoB)
03400 DNA repair and recombination proteins [BR:
vaes03400
]
MCL31_05855 (rpoB)
Enzymes [BR:
vaes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCL31_05855 (rpoB)
Transcription machinery [BR:
vaes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCL31_05855 (rpoB)
DNA repair and recombination proteins [BR:
vaes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCL31_05855 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
WDS59013
LinkDB
All DBs
Position
1:complement(1282471..1286499)
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AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQYGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKSTEEILDLFFEKVNFEVKDKTLLMA
LVPERLRGETASFDIEANGTVYVEQGRRVTARHIRQLEKDGVEFIDVPVEYIVGKVASKD
YINEATGEIIVAANQEISLEALANLSQAGYKQLEVLFTNDLDHGPFISETLRIDSTVDRI
SALVEIYRMMRPGEPPTKEAAESLFESLFFSEERYDLSTVGRMKFNSSIEREDAGEQGTL
DETDIIEVMKKLIAIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVDGVVT
DEVDYLSAIQEGQFVIAQANAILTEEGTFADELITARQKGESGLHPREHVDYMDVATNQV
VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRAEKPLVGTGIERNVAVDSGVTAVAKR
GGMVQSVDASRIVVKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVMPGEPVARG
DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEHMQLKEAKKDL
TEEFQIFEGGLLARVKAVLLNGGYSEAKLDSIDRKKWLEQTLEDDELQSQLEQLAEQWDE
LKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMVKEQQELAK
FREFLQKVYDLGDTRQKVDIATLSDDEVRTLVGNLRGGLPIATPVFDGASEASIKELLSL
GDLPTSGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggactttggtactcgtccacaa
gtgttggacattccatacctgctatcgatccagctcgattcgttcgacaagtttatcgaa
caggatcctgaaggacaatacggtcttgaggctgcttttcgttctgtatttcctattcag
agctataacggcaattctgagctgcaatacgttagctatcgtcttggtgagccagttttt
gacgttaaagaatgtcaaattcgtggtgtaacttattcaaaaccactacgcgtaaaatta
cgtctagtgatctttgataaagacgcgccagcaggtactgtaaaagatattaaagaacaa
gaagtctacatgggtgaaattccactcatgacagacaatggtaccttcgtaattaatggt
accgagagggttatcgtatcccagctgcaccgaagcccaggcgtattcttcgacagcgat
aagggtaaaactcactcatcaggtaaagttctttataacgcacgtgttattccttaccgt
ggttcatggttagattttgagttcgatccaaaagataacctgtacgtacgtatcgaccgt
cgtcgtaaattacctgcatctattattcttcgtgcacttggcaaatcgacagaagaaatc
ttggatctattcttcgagaaagtgaactttgaagttaaagacaaaacactactaatggcg
ttggttcctgaacgtctacgtggtgaaactgcgtcttttgacattgaagcaaatggtacg
gtttacgttgagcaaggtcgccgtgtaacggctcgccatatccgccaactagaaaaagat
ggtgttgagtttattgatgtacctgttgagtacatcgtcggcaaagttgcttctaaagat
tacatcaatgaagcgactggcgagattatcgttgcagcaaaccaagaaattagcttggaa
gcattagcgaacctttcacaagcgggctataagcaactagaagttctatttacgaacgat
ctagatcatggtccatttatatcagagacgctacgtatcgacagcactgttgatcgtatc
tctgcgcttgtagaaatctatcgcatgatgcgccctggtgagccaccaacaaaagaagca
gctgaatcgctgtttgaaagcctattcttctcagaagaacgctatgatctatcaacggta
ggtcgtatgaagttcaacagctctattgagcgtgaagatgcaggtgagcaaggtacgctt
gacgagactgatatcattgaagtgatgaagaagttgatcgcaatccgtaacggtattggc
gaagtggacgatatcgaccaccttggcaaccgtcgtatccgctctgttggtgaaatggct
gaaaaccaattccgcgtaggtcttgtacgtgttgaacgtgcagttaaagagcgcctaagc
cttggcgatcttgatgctatcatgcctcaagatttgatcaatgctaagcctatttctgcg
gcggttaaagaattcttcggttcttcacagctatctcagtttatggaccagaacaacccg
ctttcagaagtaacgcacaagcgtcgtatttctgcattgggtcctggcggtctaactcgt
gagcgtgctggctttgaggtacgtgacgtacacgtaactcactacggtcgtctatgtccg
atcgaaacgccagaaggtccgaacatcggtctaattaactcactatctgcatttgcacgt
tgtaatgagtacggtttccttgagacgccataccgtcgtgttgttgatggtgttgtgact
gatgaagttgattacttatcagctatccaagaaggtcaatttgttatcgcgcaggcaaac
gctattcttacagaagaaggtacgtttgcagatgagctgatcacagctcgtcaaaaaggt
gaatctggtcttcaccctcgtgaacatgttgactacatggacgttgctaccaaccaagta
gtatctatcgcagcttcgcttatcccgttcctagaacacgatgatgcgaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcggttccaactttacgcgctgagaagccgttggtt
ggtactggtatcgaacgtaacgtagcagttgactctggtgtaactgcggttgctaaacgt
ggcggtatggtgcagtcagttgatgcatctcgtatcgttgttaaagttaatgaagatgaa
cttgtacctggtgaagcgggtatcgacatctacaacctaactaaatacacacgttcgaac
caaaatacatgtattaaccaacgccctactgtgatgccaggtgaacctgttgctcgcggt
gacgtacttgctgatggtccttcaacagaccttggtgagctagcgcttggccaaaacatg
cgtatcgcattcatgccttggaatggttataacttcgaagactcgatcttagtatctgag
cgcgtagttcaagaagaccgtttcacgacaattcacattcaagaactatcttgtgtggct
cgtgatactaagctgggttctgaagagatcacagcggatattccaaacgtaggtgaatct
gctctgtctaagttagatgagtcaggtatcgtttacattggtgctgaagttaagggtggc
gacatcctagtaggtaaagtaactccgaaaggcgaaactcaacttactccagaagagaag
ctactacgtgctatcttcggtgaaaaagcctctgatgttaaagatacatcactacgtgta
ccaaactctgtttcaggtaccatcattgacgttcaagttttcactcgcgatggcgtagag
aaagacaagcgtgcgcttgaaattgaacacatgcagctaaaagaagcgaagaaagacctt
actgaagagttccaaatctttgaaggtggtctacttgctcgtgtgaaagctgtattgcta
aacggtggttactctgaagctaagcttgattcgatcgatcgtaagaaatggctagagcaa
acgttagaagacgacgagctacaatctcaacttgaacagcttgctgagcaatgggatgag
ctaaaagctgacttcgataagaagtttgaagcgaaacgtcgcaaaatcactcaaggtgat
gatctagcgcctggcgttctgaagattgttaaagtttacctagcggttaaacgtcgtatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgtaatctctaagatcaac
cctgttgaagacatgccttacgatgaaaacggtcagccggttgatatcgtactaaaccca
ctgggtgtaccttcacgtatgaacatcggtcagatcctagaagtacacttaggtttggct
gcaaaaggtatcggtgacaagatcaaccaaatggttaaggaacaacaagagcttgctaag
ttccgtgagttcctacagaaggtttatgatctcggtgatactcgtcagaaagttgatatt
gcaacattgtctgatgatgaagttcgtacgctagttggcaacctacgtggtggtttacca
attgcaactccagtatttgatggtgcttcagaagcatcaatcaaggaactattgagcctc
ggtgatctaccaacttctggtcagcttaccttgtttgatggtcgtactggtgatgcgttt
gagcgtcctgtaactgttggttacatgtacatgcttaaactgaaccaccttgttgacgat
aagatgcacgctcgttcaactggttcgtacagcctagtaactcagcaaccacttggtggt
aaagctcagttcggtggtcagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacacgttacaagaaatgctaaccgttaagtcagatgacgttaacggtcgt
acgaagatgtataaaaacatcgtcgatggtgaccatagcatggagcctggcatgccagag
tctttcaacgtattgctgaaagaaatccgctcgctaggtatcaacatcgagctagaagac
gaagagtaa
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