Vibrio alfacsensis: D1115_00070
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Entry
D1115_00070 CDS
T05841
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vaf
Vibrio alfacsensis
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaf03032
]
D1115_00070 (gyrB)
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_00070 (gyrB)
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
D1115_00070 (gyrB)
DNA replication proteins [BR:
vaf03032
]
Prokaryotic type
DNA Topoisomerases
D1115_00070 (gyrB)
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D1115_00070 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
Spindle_Spc25
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AXX99922
LinkDB
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Position
I:11482..13899
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AA seq
805 aa
AA seq
DB search
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV
VTIHEDNSVSVTDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKVVLTIHRGGHIHTQTYHHGDPQAPLAVVGDTDTTGTQIRFWPSAETFTNIE
FHYDILAKRLRELSFLNSGVSIKLVDEREADKSDHFMFEGGIQAFVEHLNTNKTPIIDKI
FHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDK
EGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSE
FLIENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKK
GKQEQYIKDEDAMNQYQVSLALDNASLHVNSEAPALAGEALEKLVQQYNAGIKLADRMSR
RYPSALVHEFIYTPRLTAEQCQDAAKVEAWTKQLVEQLNAKEVGASQYSFEVEQHEELGL
NLPKIIVRTHGVTHDYALSIDLLNSKEYGRLADLSEALDGLLEDSAYIKRGERTQPVSSF
ASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTT
LMGDQVEPRRNFIEENALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaattacgattcatcgagtattaaggtactaaagggtctggatgcggttcgt
aagcgtccaggtatgtacatcggcgacacggacgacggcaccggtcttcaccacatggta
tttgaggtggtggataactcaattgatgaagcgttggcaggtcactgtaaagacatcgtt
gtgacaattcatgaggataactcggtttcagttacggatgatggtcgtggcattccaaca
gaattgcacccagaagaaaaagtatcagcagcagaagttatcatgacggtacttcacgcg
ggtggtaagtttgatgataactcatacaaagtatcaggcggtcttcacggtgtaggtgtt
tcggtagtaaacgcgctgtctgaaaaagtggttcttaccattcatcgtggtggccatatc
catacgcaaacataccaccatggcgatcctcaagcgccactagccgtggtaggtgataca
gataccactggtactcaaatccgtttctggccaagtgctgaaacgttcaccaacatcgaa
tttcattacgatattctagcaaaacgattacgtgaactttctttcctaaactctggtgta
tccatcaaactggttgatgagcgcgaagccgataagagcgaccacttcatgtttgaaggt
ggtatccaagcgttcgttgagcacctaaacaccaacaaaacaccaatcatcgataaaatc
ttccacttcgactttgaacgtgaagatggcatctcggtagaagtggcgatgcagtggaac
gatggtttccaagagaacatttattgttttactaacaacattccacaacgtgatggtggt
actcaccttgctggtttccgtgcggcgctgacgcgtacactgaatacgttcatggataaa
gaaggtttctctaagaaagcaaaaacagcgacttcaggcgatgacgcgcgtgaaggtcta
actgcggttgtttcggtgaaagtgcctgatcctaagttctctagccaaactaaagacaag
ttggtttcctctgaagtgaaatcggcagttgaatccgctatgggtgagaaattgtctgag
ttcttgattgagaacccatctgaagcgaagatggtttgttcgaaaatcatcgatgcagca
cgtgctcgtgaagcggcgcgtaaagctcgtgaaatgactcgtcgtaaaggtgcactagac
ctagcgggcctaccaggtaaacttgcagactgtcaggaaaaagatccggcactctctgaa
ttatacatagtggagggtgattcggcaggcggctccgcaaaacaaggccgtaaccgtaag
aaccaagcaatcctaccgctaaaaggtaagattcttaacgtagaaaaagcgcgtttcgac
aagatgctgtcttctcaagaagtggcaacgctgatcactgcactaggttgtggtatcggt
cgtgacgagtacaacccggataaactgcgttaccacaatatcatcatcatgaccgatgct
gacgtcgatggttcgcacatccgtacgctactgttgactttcttctaccgtcaaatgcca
gagcttatcgagcgtggctacgtgtacatcgctcagccaccactatacaaagtgaaaaaa
ggcaaacaagagcaatacattaaagacgaagatgcgatgaaccaataccaagtgtcatta
gcactggataatgcatcgctacatgttaactctgaagcgccagctcttgctggtgaagcg
ctagagaagctcgttcagcaatacaatgcaggtattaaactggcggaccgtatgagtcgt
cgctacccaagcgcattggttcacgagtttatctacacgccgcgtctaacggcagagcag
tgtcaagatgcagcgaaagttgaagcttggactaagcaacttgttgagcaactaaatgcg
aaagaagtgggggcaagccaatacagctttgaagtcgagcaacacgaagagctaggtcta
aacctacctaagatcatcgtacgtactcacggcgtgacgcatgactacgcattaagcatt
gatcttctcaactcgaaagagtacggcagactagcggatctatctgaagcgctagacggt
ctattggaagatagtgcgtacatcaagcgtggtgagcgtactcagcctgtatcgagcttt
gcttctgcactagagtggttaattaaagagtcgcgtcgtggcctaagtctacaacgttac
aaaggtctaggtgagatgaacccagatcagctttgggaaaccacaatggacccagagaca
cgtcgtatgatgcaagtaacgattgaagatgcagtcggtgcagaccaattgtttacaacg
ctaatgggtgaccaagttgagccgcgtcgtaacttcatcgaagagaatgcgctgaaagta
gcaaacctagacgtgtag
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