Vibrio alfacsensis: D1115_00280
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Entry
D1115_00280 CDS
T05841
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03420
Nucleotide excision repair
vaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1115_00280 (uvrD)
03430 Mismatch repair
D1115_00280 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_00280 (uvrD)
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1115_00280 (uvrD)
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1115_00280 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
D1115_00280 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AXX99952
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All DBs
Position
I:52207..54381
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSTGGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
LRLLKRLIKAQNLDEKQWPARQVSWWINGKKDEGLRPSHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKIENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNALIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQEKGGVLNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYMRLIANRNDDAAFERVVNTPTRGLG
DKTLETIRFAARDRGCTMWEASVAMIEEQVLAGRAAGALSRFIELITALEDDTMEMPLHH
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAENMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRSASSGRF
SQTVVKESFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccctctttattactcgacggtttgaacgataaacaacgtgaagccgttgct
gcacctctagaaaatttgcttatccttgctggtgcagggagtggtaagactcgcgttctt
gttcatcgaattgcttggttgatgtcggtagagcaagcatcgccgttttcaattatgtct
gtaacctttaccaataaggctgcggcagagatgcgtggtcgtattgaagagttaatgatg
ggcagtacaggtggcatgtggaatggtacatttcatggtatttgccaccgtattttgcga
gcacactatcttgatgcaaagctacctgaagattttcaaatcattgatagcgacgatcag
ttgcgtctattgaagcgtttaatcaaagcgcaaaacttagatgagaaacaatggcctgca
cgccaagtatcatggtggattaacggcaagaaagacgagggtctacgtccgtcgcacatt
gacgcttaccatgatccagtcacaaaaacttatctacagttgtacaccgcttaccaagaa
gcgtgtgatcgtgctggtttggtcgactttgcggaaattttgctgcgcgcgcatgagcta
ctgcgtgataacaagttcgtccgtgagcactaccaagcacgttttaaacacattttggtg
gatgagttccaagataccaacaatatccaatatgcttggctacgtatgatggcaggtcct
gaatgtcacgtgatgatagtcggtgatgatgatcagtctatttatggttggcgtggcgct
aaaattgagaacatcgagaaatttaccctcgaattcccaagcgtaaataccattcgtttg
gagcaaaattatcgctcaaccaaaacgattcttgaggcttccaatgctttgattgcgaac
aatactgagcgtatgggtaaggagctatggacggatggtgttgtcggtgagccgatctcg
gtttacagcgcttacaatgaattagacgaagctcgttttgcggtaaataaaatcaaagag
tggcaggagaaaggtggtgtcttaaatgatgctgcgatgctttaccgtaacaacgcccag
tcgcgtgttttggaagaagccttaatccaagctggtctgccttatcgtatttacggcggc
atgcgattcttcgaacgtcaggaaatcaaagatgcgttgagttacatgcggttaatcgct
aaccgtaatgatgatgcggcgtttgagcgtgtggttaatacgccaacgcgtggtttgggt
gataagaccctagaaaccatccgctttgcggcgcgtgatcgcggctgcaccatgtgggaa
gcgagtgtggcaatgatagaggaacaagtgttagcaggtcgtgctgctggcgcattgagc
cgtttcattgagctcattactgcactagaagacgacacgatggaaatgccgttgcatcac
caaacggatcatgtgatcaagtattccggcttgtttgcaatgtacgagcaagaaaaaggc
gaaaagtcgaaagcgcgtatagaaaacttggaagaactggtcacagcaacacgtcagttc
gaaaagccggaagaagctgaaaatatgtcgctactgacagccttcctaactcatgctgca
ttagaagcgggtgaggggcaggcggatgaatttgaagatgcagtccagcttatgacactg
cacagtgcgaaaggtttggagttcccacttgtctttatggttggtgtggaagagggcatg
ttcccaagccaaatgtctgcagaagaggcgggacgtttagaagaagagcgccgattgtgt
tatgtgggtatgacgcgagcgatgcagaagctatacatcacatacgcagagatgcgccgc
ttgtatgggcaagataaataccacaagccatcgcgttttattcgtgaattgccagaaacc
tgtttagatgaagttcgcatgaaagcgcaagtcagccgttctgcaagtagtggtcgattc
agccaaacagttgtcaaagaaagcttcaatgaaactggtttttcgcttggttctcgtgtt
atgcatccaaaatttggtgaagggaccatcatcaacttcgagggcagtggtccacagagt
cgtgtacagatcgcctttaacggtgaaggtattaaatggttagtgaccgcttacgctcga
ttagagaagttgtaa
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integrated database retrieval system
