Vibrio alfacsensis: D1115_00310
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Entry
D1115_00310 CDS
T05841
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1115_00310 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaf03019
]
D1115_00310 (recQ)
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_00310 (recQ)
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1115_00310 (recQ)
Messenger RNA biogenesis [BR:
vaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1115_00310 (recQ)
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1115_00310 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AXX99956
LinkDB
All DBs
Position
I:59747..61582
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AA seq
611 aa
AA seq
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MTSTLLAEQSDSPITPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLK
LVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPF
MALTATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLVEKHKPVSQIVRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVTLELAVPRLDTAARAAKSDKLISKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLDKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaccttgttagccgaacaatcagactcgcctataacgcctcaacgtgtgttg
gaggatgtgtttggttaccaggagttccgtgatggtcagcagttggtgattgatgctgcg
gtagagggtcgcgacagcttagttatcctacctacgggtggcggtaagtcgctgtgttat
caaattcctgctttggttcgctccggcattactttggtcatatctccgctgatttcactg
atgaaagaccaagtggaccagcttaaagccaatggggtggcggctgaatgcattaactcg
accatgcctcgcgaagagctgctcagcgtgtataaccgcatgcacacaggtcatcttaag
ttggtgtacgtctcgccagaacgcgtattgatgcgtgacttcattgagcgtttggaaaac
ttgccgctatcgatgattgccgtcgatgaagcgcactgtatttcccaatggggacacgat
ttccgcccggaatacgccgcgcttggtcagcttaagcagcagttttcccatgtgccattt
atggcgctgacggcgacggcggatgacgcaacgcgccgagatattcttgagcgtctgcaa
ctgaataatccagaggtttatctaggcagcttcgaccgtcctaacattcgctacaactta
gttgagaagcataagccggtttcgcaaatcgttcgttatcttgaaacccaaaagggtaat
tgcggcatcatctattgtggtagccgtaagaaagttgagatggtaactgagaagctgtgc
aacaaccacattcgtgctgctggttatcatgccggtatggatgctgatgagcgcgcttac
gttcaagaagctttccaacgtgatgacatccagatcgtagtggcgactgtggcattcggt
atgggcatcaacaaaccaaacgtgcgctttgtagttcactttgatattccgcgcaacatc
gaatcctactatcaggaaaccggtcgtgcgggacgtgatggtctgcctgcggaagcgatg
atgttgtatgacccggcggacatcagttggctgcgtcgtatgttggatgagaaagacgac
ggtccacagaagcaggtggaaacccataaactgaatgcgatgagtgcctttgctgaggcg
caaacctgtcgtcgtcaggtgctattgaattactttggtgagtatcgtgagaagccatgt
ggcaactgcgatatttgcttagacccgccgaaacactttgatgccacggaagaagcacgt
aaggcgttgtcttgtgtgtaccgagtgaatcagagctttggtatgggctacgtagtggaa
gtgctacgtggtatgcaaaacattcgtgtacgtgaaaacggccacgataagatttctacc
tacgctatagggcgcgatcacagccacgattactgggtgagtatcttccgtcagttaatc
cacaaagggctgctgtttcaaaacattacgcgcaactcaacgctacaacttaccgaagag
gcacgtccactgctgcgtggtgatgtgactctggagttagcggttccgcgtttagacaca
gcagcacgcgcggcgaagtcggataaactcatcagtaagaactacgacaaaaagctgttt
gctaaattgcgtaaactgcgtaagtcgattgctgatgaagatggcttgccaccatacgtg
gtctttagtgacgctaccttgattgatatggcggaaatcctgccaacgtcttatggtgaa
atgctggcagtcagcggtgtaggtcagcgcaaactggataagtacgccgatccattcctt
gatttgattcaagaacacattactcaccacggataa
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