Vibrio alfacsensis: D1115_00580
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Entry
D1115_00580 CDS
T05841
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vaf
Vibrio alfacsensis
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vaf03021
]
D1115_00580 (rpoH)
Transcription machinery [BR:
vaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D1115_00580 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_10
HTH_3
UCR_14kD
KORA
IF2_N
Motif
Other DBs
NCBI-ProteinID:
AXX99996
LinkDB
All DBs
Position
I:108350..109207
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AA seq
285 aa
AA seq
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MTKEAYPMALVTQDSLDSYIRSVNSYPMLTPEEERGLAERLHYNGEIDAAKGLILSHLRF
VVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKIATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPSEVREMESRLAAIDS
TFDMPMDEDDSSNSYTAPMVYLEDKSSDVADNIEAANWETHTNNRLGHALASLDERSQRI
VRSRWLDDEKATLQDLADEFGVSAERIRQLEKNAMKKLKLAVGEF
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagcgtatccgatggctctagtcacgcaagatagccttgatagctatatt
cgttctgtaaacagttacccaatgctgacaccagaagaagagcgtggactggcagaaaga
ttacactacaatggtgagattgatgcggcgaaaggcctgatcttgtcacacctacgattc
gttgttcacgttgctcgtggttactctggctatggtttaccaatggcagatctagtgcaa
gagggcaacattggcctgatgaaagcggttaagcgctttaatcctgaagtgggtgttcgc
cttgtctcattcgccgttcactggatcaaagcagagatccatgaatacgtactgcgtaac
tggcgtatcgttaagatcgcaacaaccaaagcgcagcgtaaattgttcttcaatctgcgt
aagtcgaaaaagcgtttaggttggttcaataatggtgaagtcgaaacggttgcacgtgaa
ctaggtgttgagccatctgaagtccgtgaaatggaatctcgccttgcagcgatagattca
acttttgatatgccaatggatgaagatgacagctccaactcatacaccgctcctatggtg
tatttagaggataaatcttctgatgtggcagataacattgaagcggctaactgggaaaca
cacactaacaatcgtttaggtcacgcattagcaagcctcgacgagcgcagtcaacgcatt
gttcgttctcgttggttagatgatgaaaaagcaacgctgcaagaccttgctgatgagttt
ggggtgtctgctgagcgtattcgtcagttagaaaagaatgcgatgaagaaacttaaactg
gctgttggcgagttctaa
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