Vibrio alfacsensis: D1115_00800
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Entry
D1115_00800 CDS
T05841
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1115_00800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vaf03021
]
D1115_00800 (rpoC)
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_00800 (rpoC)
Enzymes [BR:
vaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1115_00800 (rpoC)
Transcription machinery [BR:
vaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1115_00800 (rpoC)
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1115_00800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXY00025
LinkDB
All DBs
Position
I:147945..152147
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFITSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLSGPAEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPFSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMANLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVYEHDCGTLEGVDMMPHIEGGDVKVALTELAL
GRVVAEDVLKPGTEEVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSMKL
NNAKFVLADDGKIVITSRAAELTIIDEFGRTKEKHKLPYGTLLNKADGQAVEAGETVANW
EAHTLPIITEVAGRVQFVDMIDGVTISRQTDDLTGLSSSEVTDPAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIVDGAEVGVGNTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRDSGEVYEEMVPKHRQLNVFEG
ERVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGEQVEYTQVKIANRELEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQSKRAEAQEGPS
AEQATDNLAALLNAGFSSED
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagagtttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atctttggtccagtaaaagactacgaatgtctttgtggtaaatacaagcgcttgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacagactaaagtacgtcgtgac
cgtatgggccacatcgaacttgcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgctt
actgaagaagagtatctggatcgtctagaagagtggggtgacgagttcactgctaagatg
ggtgcagaagctatcaaggacctactaggttctatggatatgcacgctgaagcagaacaa
atgcgcgaagagctagaaacgactaactctgaaactaagcgtaagaaagtaactaagcgt
cttaaactggtagaggcattcattacttcgggtaacaacccagagtggatgatcctaact
gtacttccagtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttctgatctaaacgacctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcagctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgcggtcgtgcgatcactggttctaac
aagcgtcctctaaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagaacgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccactagtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgacaagatcaacgtg
aaaggtgagggcatgtacctttctggcccagcagaggctgagaaagcataccgcactaag
acggctgagctacacgcacgcgttaaagtacgtattacagaaactgttgtagatgaagac
ggcaacagcacgactgaaactaagatggttgatacaactgtcggtcgcgcaatgctatgg
caaatcgtgccagctggcctaccgttcagcatcgttaaccaaaagctaggtaagaagcaa
atttctaacctacttaacgaggcttaccgtaagctaggtcttaaagataccgttatcttc
gctgaccaaatcatgtacacaggtttcgcatacgcggcactatctggtgtatctgttggt
atcgacgatatggttgtaccgccagctaagtacactgaaatcgcggaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgcgggcgaacgatacaac
aaagttatcgatatctgggcatcgaccaacgatcgcgtagcaaaagcgatgatggcaaac
ctttcatctgaaacggtagtcaaccgtgatggtgaagaagaacaacaagaatcgtttaac
agcatctacatgatggctgactcgggtgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggctcgtccggatggttcgatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgtggttgtatacgaacacgactgtggcacgctagaaggcgtt
gatatgatgcctcatatcgaaggtggtgacgtgaaagttgcactgacagagcttgcgcta
ggtcgtgtagttgctgaagacgttctaaagccaggtactgaagaagttctgatcccacgt
aatactctaattgatgagaagtggtgtcagatcatggaagaaaactcagtagacagcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgaccttgcacgtggtcacctagtgaaccaaggtgaagcagtaggtgtaatcgctgct
cagtctatcggtgaaccaggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttctatgaagcta
aacaacgctaagttcgtactagcagacgacggtaagattgttatcacttctcgtgcagca
gaactaactatcattgatgagttcggccgtacgaaagagaagcacaaactgccttacggt
acgctactaaacaaagctgatggtcaagcagttgaagctggtgaaacagtggcaaactgg
gaagcgcacacgctaccaatcatcactgaagtagcaggtcgtgttcagttcgttgacatg
attgatggtgtaactatctctcgtcaaacagatgacctaacaggtctatcttcaagcgaa
gtgacagacccagcggctcgcccagctgcaggtaaagatatgcgtccagctatcaaactt
gtagatgagcaaggtaacgacgtaatgatccctggtactgatatgccagcgcattacttc
ctaccaggtaaagcgatcgtaaacatcgttgatggtgctgaagttggtgtgggtaacaca
cttgctcgtatcccacaaaaatctggcggtaacaaagatatcaccggtggtcttccacgc
gtagcagacctgttcgaagctcgtaagcctaaagagcctgcgattcttgctgaacacaca
ggtacagtaagcttcggtaaagagaccaaaggtaagcgtcgtctagttatcactcgtgat
agtggtgaagtttacgaagaaatggtacctaagcatcgtcagctaaacgtgttcgaaggt
gagcgcgttgagcgtggtgatgttatcgctgatggtccagagtctccacatgacatccta
cgtctacgtggcgtgcatgctgtgacgcaatacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcaaatgcta
cgtaaatgtacaattactcacgctggtgactctgagttcctacctggtgagcaagttgaa
tacacgcaagttaagatcgctaaccgtgaactagaagctgaaggcaaagagcctgcacgt
ttcgaacgtgagctactaggtatcactaaagcatctctagctaccgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgatctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaaagcaagcgtgctgaagcgcaagaaggtccatct
gctgaacaagcaacagataacctagcggcacttctaaatgcaggcttctcttcagaagac
taa
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