KEGG   Vibrio alfacsensis: D1115_02305
Entry
D1115_02305       CDS       T05841                                 
Name
(GenBank) type I restriction endonuclease subunit R
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
vaf  Vibrio alfacsensis
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vaf02048]
    D1115_02305
Enzymes [BR:vaf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     D1115_02305
Prokaryotic defense system [BR:vaf02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   D1115_02305
SSDB
Motif
Pfam: T1RH-like_C SWI2_SNF2 HSDR_N T1R_D3-like ResIII Helicase_C DUF87 RNA_helicase TruB_N
Other DBs
NCBI-ProteinID: AXY00254
LinkDB
Position
I:454454..457711
AA seq 1085 aa
MNLSFSEAKLEQAIIELLGEQGYPHVVGSDIARDSKQQVLILDDLRCYFAKRYQADGITE
SEVDTLVRMLSTLPASDLYHSNKTFCDWLSNGFLFKREDRSKKDLYIELIDTKHLAHSLA
AMFQPQVEDERKVAEDLVSYLENADSNIYKVVNQLEIEGVDEQIRIPDGILYVNGLPLVV
FEFKSAVREQEATVHDAWKQICTRYRRDIPKLFVYNALCIVSDGVNNKMGNLFAPYEFFY
AWRKVTGNESTEKDGINSLYTMIAGLFEKTRLLDVVKNFIFFPDTSKKELKLCCRYPQYY
AARKLYYNIKQERKPIGSGKGTYFGATGCGKSYTMQFLSRLLMKSIDFESPTIVLITDRN
DLDDQLSKQFCNATNYIGDEMVVPVTSRQDLRDKLQGIKSGGVFLTTIHKFTEDIELLSE
RTNIICISDEAHRSQVNLDKKVIMKYQNGVAVDVKETYGFAKYLHDSLPNATYVGFTGTP
IDATLDVFGNPVDSYTMTEAVNDEITVRIVYEGRAAKVILDNSKLEEVEKYYQTCAEAGA
SEHQIEESKKASANMNAILGDPDRIEALAKDFVEHYDQRVSEGSTIKGKAMFVCASREIA
YEFYKEVKRLRPEWFEEKLAIDGVTLTKKEQEELMPLAMVQMVMTRGKDDDADMYHLLGS
KDYRKDLDKQFKNPKSNFKIAIVVDMWLTGFDVPELDTIYIDKPLQKHNLIQTISRVNRK
FEGKDKGLVVDYIGIKSRMNQALAMYSKADESNFEDVRLSVIEVKNHIDLLGQMFHKFDA
SGYYSGEARLQLECLNQAAEFILQTKKGENRFMGLVKRLKAAYDVCCGSELLSQQERDRI
HFYIAVRSIIFKLTKGDAPDTAQMNKRVRELVAEALRADGVEEIFTIGDEHAEAIDIFDE
DYLARINKIKLPNTKIQLLQKLLEKAISDFKKVNQLQGINFSKRFQSLVEQYNERRENDV
LNGEEFETFSQEMTNMIFDMVKEMGSFAELGIDQEEKAFLDILTHMRKKYDFTYDDDKML
DLAKEMKTIVDDVAQYPDWAGRDDIKAKLKVDLILLLHKFGFPPVANDDVYKGVLEQAEN
YKKNS
NT seq 3258 nt   +upstreamnt  +downstreamnt
atgaacctgagtttttcggaagccaaattagaacaagccatcattgagctgctcggcgag
cagggatacccgcatgttgtggggagtgatattgcgcgagactcaaagcaacaagtgctg
atcctcgatgacttgcgctgttattttgccaaacgttatcaagcggatgggatcaccgag
agtgaagttgatacgttggtgcgtatgctttcaaccttgccagcaagcgatctttaccac
agtaataaaacgttttgcgattggctttcgaatggttttctgtttaagcgcgaagaccgc
agtaagaaagatctctatatcgaattgatagacaccaaacacttggcgcattcattggcg
gcgatgtttcaacctcaagtagaggatgagagaaaggtggctgaggacttggtaagctac
cttgagaatgctgacagcaatatatacaaggtagtgaatcagctagagattgagggcgtt
gacgagcaaataagaattcctgatggcattttgtatgtgaacggcttaccgctggtggtt
tttgagttcaaaagtgcggttcgtgagcaagaggccaccgtacatgacgcgtggaagcaa
atctgcacgcgctatcgccgtgatattcctaagctgtttgtttacaacgcgctttgcatt
gtcagtgatggcgtgaacaacaaaatgggcaatctgtttgcaccttatgagtttttctat
gcatggcgcaaggtgacgggcaatgaatcgacggaaaaggacggcatcaattccctctat
accatgattgccgggttgtttgaaaaaacgcgtttgctcgatgtggtgaaaaacttcata
ttcttccctgatacctcaaagaaagagcttaagttatgttgccgttatcctcagtattac
gcggcgcgtaagctttattacaacattaagcaagagcgcaagccgattggctcgggtaag
gggacctatttcggggcgacgggatgtggtaagagctacactatgcagttcctttctcgc
ctgttgatgaagagcattgattttgaaagcccgaccattgtgttgatcaccgaccgcaat
gatttggatgatcagctttctaagcagttctgtaatgcgactaactatatcggtgacgaa
atggtggtgcctgtcacgagtcgtcaagatttgcgtgacaaactgcaaggcatcaaaagt
ggtggggtgttcctgacgacgatccataagttcacggaagacatcgagttactttccgag
cgtaccaacatcatttgtatttccgatgaagcgcaccgttcacaagtgaaccttgataaa
aaggtgatcatgaaataccaaaacggcgtggcggtcgatgtcaaagagacgtatggcttc
gctaagtatttgcatgattcattgccgaacgcgacttatgttggttttacgggtacgccg
attgatgcaaccttagatgtgttcggtaatccggtcgacagttacacgatgacggaagcg
gtgaatgatgaaatcacggttcgtattgtctatgaggggcgcgccgcaaaagtcatccta
gacaacagcaagctagaagaagttgagaaatactaccaaacgtgtgccgaggcgggggcc
agtgagcatcaaattgaagagagcaaaaaagcatctgccaatatgaatgcgattttgggc
gatccggatcgcattgaagcgttagcgaaagactttgttgaacattatgaccagcgagtg
tctgagggctcgaccattaaaggcaaggcgatgtttgtgtgtgccagccgcgagatcgct
tatgagttctataaagaggtaaaacggcttcgccctgaatggtttgaagagaaactcgcc
attgatggcgtgacgttaaccaagaaagaacaagaagaactcatgccgttggcgatggtt
caaatggtgatgacacgcggcaaagatgatgatgccgacatgtaccatcttttgggcagt
aaagactatcgcaaggatttggataaacagttcaaaaacccgaaatcgaatttcaaaatt
gccattgtggtggacatgtggctcacgggatttgatgtgcctgagctagatacgatctac
atcgataagccattgcaaaagcataatctgattcaaacaatttcacgggtgaaccgtaag
tttgagggtaaggataaaggcttagtggtggattacatcggtataaaatcacgcatgaac
caagcgttggcgatgtactctaaagcggatgaaagcaattttgaggatgtacgtctttcg
gttattgaggtgaaaaaccatatcgatttacttgggcaaatgttccataaatttgatgca
agtggctactactcgggtgaggcgcgtcttcagcttgagtgcttaaaccaagcggcggag
ttcatcttacaaactaagaaaggcgagaaccgtttcatggggctggtgaagcgtttaaaa
gccgcgtatgacgtgtgttgtggcagtgagctattatcacaacaagagcgagatcggatc
catttctatatcgcagtgcgttctatcatcttcaaactgacgaaaggcgatgcgcctgat
accgctcaaatgaataagcgggttcgtgagctggtggcggaagcattgcgagccgatggc
gttgaagagatttttaccatcggtgatgagcacgccgaagccatcgatatttttgatgag
gactatctggcgcgaatcaacaaaattaagctgccgaataccaagattcaactgctgcaa
aagctgctagaaaaagccatcagtgactttaaaaaggttaaccaactgcaagggattaac
ttttctaagcgtttccagtcgctggtggagcaatacaacgagcgtcgagaaaatgatgtg
ctcaacggtgaagaattcgagacgttctctcaagagatgaccaatatgattttcgacatg
gtcaaagagatggggtcgtttgctgaattgggtatcgaccaagaagaaaaagcgtttctc
gatattttgacgcatatgcgcaagaagtacgatttcacctatgacgatgacaagatgctc
gatcttgcaaaagagatgaaaaccattgttgatgacgtagcgcagtaccctgattgggct
gggcgggatgacattaaagccaaactgaaagtggatttgatattgttgctccacaaattc
ggcttcccgcctgtcgcaaatgatgatgtgtacaagggcgtgttggagcaggctgagaac
tataagaagaatagttaa

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