Vibrio alfacsensis: D1115_02780
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Entry
D1115_02780 CDS
T05841
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vaf
Vibrio alfacsensis
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vaf03016
]
D1115_02780 (truD)
Enzymes [BR:
vaf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
D1115_02780 (truD)
Transfer RNA biogenesis [BR:
vaf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
D1115_02780 (truD)
Prokaryotic type
D1115_02780 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AXY00319
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All DBs
Position
I:540819..541862
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AA seq
347 aa
AA seq
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MSDILSSFAYLTGKPVASAKIKAQPEHFQVREDLGFAFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGDTPDFSEFLAQYPSIEIIATDRH
NKKLRPGDLVGNEFVVTLSEVTDVADVEQRLEKVKQVGVPNYFGSQRFGNDGNNLEEARR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSARLENGVFDKFIDGDIAQTQSGTQLIDAS
NIAELQAQLMQGEVSITAALAGDNALPTQSDALVLEQPFLDEEPDLMALIRGNRMRHDRR
DIALKPQDLTWTVDGNNITLTFSLDAGSFATSIVRELVNEEKVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcatcattcgcttacctaactggtaagcctgtagcatcagcaaaa
attaaagcacaaccagagcatttccaagtacgtgaagaccttggctttgcctttactggc
gaaggtgagcacttgatggtgcgtattcgtaaaaccggagaaaataccagctttgttgcg
aacgaattagcaaaagcttgtggcgtgaagtcgaaagacgttagctgggccggtcttaaa
gatcgccacgcagtgacagagcaatggttaagtgttcacctaccaaaaggtgatacacca
gacttttctgagttcttggcgcaatatccgagcattgaaattattgccacagatcgtcac
aacaaaaagttacgtccaggcgacctagtagggaacgagtttgtggttaccttgtctgag
gtgactgacgtggctgatgttgagcaacgtcttgaaaaagtgaaacaagtcggtgtgcca
aactactttggcagccagcgttttggtaacgatggcaacaaccttgaagaagcgcgtcga
tggggccgtgaaaacgtacgtacccgtaaccaaaacaaacgcagcatgtacttatctgct
gcgcgctcttggatcttcaaccgtattgtttctgctcgtttagagaatggtgtatttgat
aaattcatcgatggtgatattgcacagacccaatctggcactcaactcattgatgcaagc
aacattgcagagctacaagctcaactgatgcaaggtgaggtctctattacagcggcactc
gctggcgataatgcgctacctacccaaagtgatgctctggtattagagcaaccgttttta
gatgaagaacctgatttaatggcgttgattcgtggtaaccgaatgcgtcatgaccgacgt
gatattgcgcttaagccgcaagacttaacttggacggtggatggaaacaacatcacgttg
acattctcacttgacgcaggttcatttgctacctcaatcgtgcgagagttggttaacgaa
gaaaaagtagaaagagagtattaa
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