Vibrio alfacsensis: D1115_03610
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Entry
D1115_03610 CDS
T05841
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D1115_03610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_03610
Enzymes [BR:
vaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D1115_03610
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D1115_03610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AXY00453
UniProt:
A0ABN5PB56
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All DBs
Position
I:732098..735571
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AA seq
1157 aa
AA seq
DB search
MFTVYHSNQVDVLKSLLVELIRINPLENPFEKEQILVQSPGMSQWLKMELAKEFGVAANL
DFPLPATFIWDMFTQVLPDVPKRSAFNKESMTWKLMHLLPGLLHDDAFEPLARYLQDDND
NSKLYQLAEKIADIFDGYLVYRPEWIASWEAGQTVAELEDEHPWQPILWQALYDHTVTLG
QSPYHRANLYEHFIDTLESLNGNFDHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMF
TNPCRYYWGEVRDRKFLARLAAKHRQHVVWQEDHSEVQGESEQLKGSLEENVIDELHTDV
VGNSLLASMGKLGRDNMYLLSQLESHEIEAFVDVERDSLLHQLQADILNLEEHQDDQQID
SSQHKQVVSLGDKSLSLHSCHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYS
PAIQAVFGNAPGERFIPYSISDRTADQESPILAAFMQLVNLPNTRCLASELLELLETPAI
LKRFDLSEDDFLQAKRWVEESGVRWGLDANTGCEFELPETRQNTWQFGIQRMLLGYAMPE
SAGLFEAQEGSLSPYNEVQGMGAELAGKLAHFIQQISQYRSKLSHVQSIDAWRETLVAML
DSFFSVELEGEMALKSIRDTLSQLKEQLTDAAFDDALSPSIVSQYLQNKLSGTRVSQRFL
AGQVNFCTLMPMRSIPFRTVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL
FLEAMLSAQQSLYISYVGRSIQDNTERVPSVLVSELMEYCHQNYCLDGDQDQPVDDSGDK
LLNELVSVHAMVPFSPSAFQGSHSSYAKEWIPAALTQSSQSQGHARREFNRALDNYLLGA
TFPIELDLVELQRFWRLPVQYFFNRRLKVMFEPPLPVMEDDEPFVLGGLESYQMRDELLE
TLLETAITQPSAKADVLKHFMSEQRAQGKLPVGAFGDIEFETNRVQAEELVDKLAFLFGA
PQDDLEIDLTFDVLGEGKNIRLTGWLTQCYQSGLIRYRSGKIRAQDYLAAWIDHLAMSAS
GHARKTHVIGYDRKEGAVHLVYPAMADAAQAKQLLAELVRLFFAGMTKPLPYFPKTALAC
VEAGFSRGHWVDDEEKSLKKMADAFNDGYMSPGEGNNVYISRIWPAWNDELAAEVRMLTA
LVLQGARLAAMDAEDNK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgtttactgtctatcactccaaccaggtcgatgttcttaagtcacttcttgtcgaactg
attcgtattaatccactagaaaacccatttgaaaaagagcaaattctggtgcagagcccg
ggtatgtctcagtggttaaaaatggaattggcaaaagagtttggtgttgccgcgaactta
gattttcccctgccagcgacgtttatctgggatatgttcacccaagttttgcctgatgta
ccaaagcgaagcgcattcaataaagagtcgatgacgtggaaattaatgcacttgctccca
ggcttactacacgacgatgcattcgaaccattagctcgctatcttcaagatgacaacgac
aactctaagttgtatcaactggccgagaaaatcgccgatattttcgatggttatttggtg
tatcgcccagaatggattgcaagctgggaagcgggacaaaccgtcgctgaacttgaagat
gaacacccgtggcagccgattttgtggcaagcactgtacgatcatactgtgacgttaggg
caatcaccttatcatcgtgccaatctgtatgaacactttattgatacgcttgagagctta
aacggtaacttcgaccatctgccgaaacgcctttttgtgtttggcatttcgtcattgccg
ccacgctacatggatgcgctaaaagccattggtgaacatattgatgtgcatctgatgttt
accaacccttgtcgttactactggggtgaagtgcgtgaccgtaaattccttgcgcggtta
gcagcaaaacatcgccagcacgtggtgtggcaagaagaccattctgaagtacaaggtgag
agtgagcagctaaaagggtcactagaagaaaacgtgattgatgaattgcataccgatgtg
gtgggcaatagcctattggcttcgatgggcaagctagggcgtgacaatatgtatttgtta
tcgcaactagaatcccatgagattgaagcctttgtggatgtcgagcgcgacagtctgctc
catcaactgcaagctgacattcttaatttagaagagcaccaagacgaccagcaaatcgac
agcagtcagcacaaacaagtggtgagtttgggtgataaatcgctgagcttgcactcttgt
catagcccaatgcgagaagtggaagtgctgcacgaccagcttttggcgatgttcgatgct
gacccaacactgaaaccgcgcgacattattgtcatggtggcggatatcaatgcctacagc
cctgcgattcaagcggtattcggcaacgcccccggtgagcgatttattccttattcgatc
tcagaccgaacggctgatcaagaaagcccgattttggcagcgttcatgcaattagtgaat
ttacctaatacgcgttgcttagcatctgagctattagagctgttagaaacgcctgctatt
ttgaagcgatttgatctcagtgaagatgacttcttacaagcgaaacgttgggtggaagag
tcgggtgttcgctggggattagatgcgaatacaggctgtgaatttgaattgccagaaacc
cgccaaaacacatggcaatttggtatccagcgtatgttattaggttacgcaatgccagaa
tctgccggtttgtttgaagcgcaagaaggtagcctctcgccatacaacgaagtgcaaggt
atgggcgcagaacttgccggcaagttagcccattttattcaacaaattagccagtatcgc
agcaaactttcccatgttcagtcgattgatgcgtggcgtgaaaccttggtggcgatgttg
gatagcttcttctctgttgagctagagggggaaatggcgctcaagtccattcgagatacc
ttaagccaactgaaagaacaactgaccgatgcggcatttgatgatgccttgtcaccttcc
attgttagccagtatttacaaaacaagctgtcaggaacacgagtcagccagcgtttcctt
gctggacaagtgaatttctgtactctgatgccgatgcgctcgatcccgtttagaaccgtg
tgtctgcttggtatgaacgatggcgtttacccgcgttcaatgccacctgagggttttgat
ttaatgacgggacgtactaaaccgggtgaccgttcgcgtcgagatgatgaccgctacctg
ttcttagaagccatgctgtctgcgcaacaaagtttgtacatcagttacgttggacgttct
attcaagataacaccgagcgtgtgccgtccgtgttggtgtctgagttgatggaatattgc
catcagaactattgcctagatggcgatcaagaccagccagtcgatgattcaggcgataag
ctactcaacgagttagtgagtgtgcatgccatggtgccattcagcccaagcgcattccaa
ggttctcattcaagctatgctaaagagtggattccagcggcgttgacccaaagcagtcaa
tcgcaaggtcatgcacgacgtgagtttaaccgcgcattggataattacttgcttggtgcg
actttccccattgagttggatttggttgaattgcaacgtttctggcgcttgccagtgcag
tatttctttaaccgccgtttgaaagtgatgttcgagccaccattgcctgtgatggaagat
gatgagccattcgtgttaggcggtttagaaagttatcaaatgcgtgatgaactactagaa
accttgctcgaaaccgccattacccaaccgtccgcaaaagcagatgtactcaagcacttt
atgagtgagcaacgcgcacagggcaaattaccggttggcgcatttggtgatatcgagttt
gaaaccaaccgcgtgcaagcggaagagctggtggataagttggcgttcttattcggcgca
ccgcaagacgatttagaaatcgaccttacctttgatgtgcttggtgaaggaaaaaacatc
cgtctaaccggttggctaactcaatgctatcagtccggtttgattcgctaccgcagcggt
aaaattcgtgcgcaggattaccttgctgcatggattgatcatcttgctatgtctgcctct
ggtcacgctagaaagacccacgttatcggttatgaccgcaaggaaggcgcggtgcattta
gtttacccagcaatggcagatgctgctcaagcaaaacaacttcttgctgaattagtacgt
ttgttttttgcaggcatgaccaaaccattgccatacttcccgaaaacagcactggcgtgt
gttgaggcgggctttagtcgtggccactgggttgatgacgaagagaaatcgctgaagaaa
atggcggatgcattcaatgatggctacatgagtccaggcgaaggaaataacgtgtatatt
tcgcgtatttggccagcttggaatgatgagctagcggcagaagttcgcatgttaacggcg
ttggtgcttcaaggcgcaagattggcggcgatggatgctgaagataataaataa
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