Vibrio alfacsensis: D1115_03925
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Entry
D1115_03925 CDS
T05841
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1115_03925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaf03019
]
D1115_03925
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_03925
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1115_03925
Messenger RNA biogenesis [BR:
vaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1115_03925
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1115_03925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
TackOD1
DDE_3
Motif
Other DBs
NCBI-ProteinID:
AXY00500
LinkDB
All DBs
Position
I:complement(795455..797380)
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AA seq
641 aa
AA seq
DB search
MQSGSLMQTLQSVFGFDALRPGQQPVIDAVMNGHSAAAIFPTGSGKSLCYQLPATQLPYL
TLVISPLLALMKDQLSFLQSKGIAAASIDSSQNREEAQQVMAGVKSGHIKVLMISVERLK
NERFREFIRQIPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNISQSLLLTATATPA
VIEDMQKKFSIDNEHITVTGFYRPNLDISVVPCDEENKQTQLNDIIAAEPKLPSIVYVTQ
QQTAEQVANSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPSAIQYV
LEQIRENAPQWEMIALRLSRDSNIRQLPLKTLLVYLELADVIKAKYSYFAEYRFKFLQDQ
QFILNQFQGERRQFVEAIFTCSTKAKIWCQVDLEALWMHYQSERSRVVAALDYFHQNGWI
ELESKQLTDVYSVLPATQSQDALTEQLVELFQSKERKDIERIHTMLNLFQSSDCLSHQLA
HYFADYDAPTRCGHCSVCRGEVATFPQTQHEQPETLHLKAWVNEFVQLSPSAISNEAVAR
FLCGISTPIIARLKASKLQGYGAMANTSFSQVLQHVEVARS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtggctcgcttatgcaaacacttcaatccgtgtttggttttgatgccttacga
ccaggccagcaacctgttattgacgccgtaatgaacggacactctgctgctgctatcttc
ccaacaggttccgggaagtcactttgctaccaactcccagcgacacagttaccgtatctc
actttggtcatttcacctctattggcattgatgaaagaccaactcagctttttacaaagt
aaagggattgcagccgcctctatcgacagcagtcaaaacagagaagaagcacagcaagtc
atggctggagttaagagtggtcatataaaagtgttgatgatttctgtagagcgactcaag
aacgaacgctttcgtgaattcattcgtcaaattcctatttctttgatggtggtggatgaa
gcacactgtatctctgagtgggggcataatttccgtcccgattatcttaaattgcctcag
tatcaacgtgagctcaacatctctcaatcactcctgctaaccgccaccgcaacaccagcg
gtgattgaagatatgcagaagaagtttagcatcgacaatgagcatatcaccgtcaccggt
ttctatcgccctaacctcgatatttctgtggtgccttgcgatgaagaaaacaaacaaact
caattgaatgacattattgctgcggagcctaaactgccgagtatcgtgtacgtaactcaa
cagcaaaccgcagagcaagttgccaactcactgattcgtttgggcatcaatgctcacgct
taccacgcaggtatgaagagcgacattcgtgagaaaatccaacagcagtttatggactct
caaatcgactgcattgttgcaaccatcgcgtttggtatgggtgtcgataaatccgacatt
cgccgcgtgattcattttgatttgccaaaatccatcgaaaactacgcgcaagaaatcgga
cgcgcagggcgtgatggtcaacgatctgaatgcatcttgttaggaaatacgtcaggctta
accgtacttgagaattttgtgtacggcgataccccagagccaagcgccatccagtatgtc
ttagagcaaattcgagaaaatgcgcctcaatgggaaatgatcgcactgcgcctttctcgt
gacagcaatattcgccaattaccacttaagaccttgctcgtttatcttgaattagcggac
gttattaaagctaagtacagttactttgctgaataccgatttaagtttttgcaagatcaa
cagtttatcctcaaccagttccaaggtgagcgtcgtcagtttgtcgaggccattttcacg
tgttcgaccaaagcaaaaatctggtgccaggtagatttagaagccctatggatgcactat
caatctgaacgcagccgagtggtcgctgctttagactacttccatcaaaacggttggatt
gaattagaaagtaaacaactcacggatgtttattccgtattgcctgcaactcagagccaa
gacgcactcaccgaacaattagttgagctatttcaatcaaaagaacgtaaagatatcgaa
cgtattcacacgatgctgaacctgttccaatcgtctgattgcctaagccatcagttggct
cactactttgccgactatgatgcgcctacacgatgtggtcattgctctgtatgtcgtgga
gaagtggcgacattccctcaaacgcaacatgagcaaccagaaacgctccatctgaaagca
tgggtaaatgagtttgttcaactctcacctagtgccatcagcaatgaagccgtggctcgc
tttctatgtgggatcagcacgcctatcattgctcgacttaaagcaagcaagcttcaaggt
tatggcgctatggcaaatacctctttctctcaagtgttgcaacacgttgaagtggcacga
tcctag
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