Vibrio alfacsensis: D1115_04100
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Entry
D1115_04100 CDS
T05841
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03030
DNA replication
vaf03430
Mismatch repair
vaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1115_04100
03430 Mismatch repair
D1115_04100
03440 Homologous recombination
D1115_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaf03032
]
D1115_04100
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_04100
Enzymes [BR:
vaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D1115_04100
DNA replication proteins [BR:
vaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D1115_04100
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D1115_04100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AXY00533
LinkDB
All DBs
Position
I:830621..834100
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGC
GVKPIIGADFKMQSDEFGEELTQLTVLAANNTGYKNLTLLISKAYLRGHVQHQPVIDKAW
LAELSEGLIVLSGGKSGELGKALLKGNRKLVESCVEFYKQHFADRFYLELIRTGRPDEET
YLHFAVELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSTQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMKETEFLVMKSREGL
EDRLEFLFPDEQERLKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKAPVRIESIPLDDAASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEDGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPA
EFMAAVMTADMDNTEKVVGLVDECLRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILAAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLNDAVKSASQHHQAEAFGQADMFGVLTDAPEEVEHKYTQVPPWPEKVWLEGERETLGLY
LTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTIAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDKFFAEFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDDLKQLLGKDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaagttcgttcaccttcgagtccatagtgattattcgatggtggatggt
atcaacaaagttccaccgcttgttaagaaagttgctgagctcggtatgccagcgatggcg
ttaacagacttcaccaacttatgcggtctggtgaaatactatggtacagcgcatggctgt
ggcgtaaaaccaatcatcggtgcagattttaaaatgcaatcggatgagtttggtgaggag
ctgacacaattaacggtattagcagcaaacaacactggttataaaaacctaacgttgttg
atttctaaagcttatctccgtggtcatgttcaacatcaaccagttattgataaagcatgg
cttgctgagctttctgagggtttgattgttctttccggcggaaaaagtggtgagctgggt
aaagcgttactaaaaggcaaccgaaagcttgttgaaagttgtgttgagttttacaagcag
cactttgcggatcgtttttacttagagttaattcgtactggccgaccagacgaagaaacc
tacttacattttgcggtggaattggcggagcaggaagatctacctgttgttgcgacgaat
gaagtggtattcatcagcgaagacttgtttgatgcccatgaaatacgagttgccattcat
gatggctatactttagaagaccctcgtcgtcccaagaattacagtacgcaacagtattta
cgtagtgaagaagagatgtgtgagctgtttgctgacatccctgaagcgctagaaaacagt
gttgaaatcgcaaagcgttgtaacgtgacagtgcgtcttggcgaatacttcctgccggct
ttccctacagaggggatgaaagagaccgagtttttggtcatgaaatctcgcgagggattg
gaagaccgtcttgaatttctattcccagatgaacaagaacgtctgaaacgacgtccagaa
tatgatgagcgtttgcaaattgagctcgacgtaatcaaccaaatgggattcccaggttac
ttcttgatcgtaatggagttcatccagtggtcgaaagataatgcgattccagttggtcct
ggtcgaggttctggtgcaggttcattggtggcatacgcgctaaaaattacggatcttgac
ccactcgaatatgatttgctattcgaacgtttcttgaaccctgaacgtgtatctatgccc
gatttcgatgtcgatttctgtatggataagcgcgatcaagtgattgatcacgttgcggaa
atgtacggtcgtgatgcggtatctcagatcatcacgttcggtaccatggcggcaaaagcg
gttattcgcgatgttggtcgtgttcttggtcatccatttggttttgttgaccgcatttcc
aaattgattccgccagacccgggcatgaccctggagaaagcgttcaaggcagagccagcg
ttgcctgagttgtacgaagccgacgaagaagtgaaagagcttatcgataagtgccgcatc
cttgagggttgtacgcgaaatgccggtaagcatgcgggtggtgttgtaatctcaccaacc
acgatcacagactttgcgccaatttatgcggactcggaagggcacttccctgttactcag
ttcgataagaacgacgtagaaacggccggcttagttaagttcgacttcttggggctgcgt
acactgaccatcatcgactgggcacttgggttaattaacccgcgcttagagaaagagggc
aaagcccccgttcgtatcgaatcgattccattggatgatgcggcgtcattccgtttactg
caaaactcggaaaccaccgcggtattccagcttgaatctcgcggcatgaaagagctgatc
aagcgtcttcagccagactgtttcgaagacatcatcgcactggtagcacttttccgtcca
ggaccgctgcaatcgggcatggttgataactttatcgaccgtaaacatggtcgagaggca
atctcatacccagatgaaaagtggcaacacgagtcgcttaaagaaattttagacccaact
tacggcatcatcctgtatcaagaacaggttatgcagatcgcgcaggtactgtctggctac
acgcttggtggtgcggacatgcttcgtcgtgcgatgggtaagaaaaagccagaagaaatg
gcgaagcagcgtgcgacgttcgaagatggcgcgattgccaatggcgttgatggcgagttg
gcgatgaaaatcttcgacttggtagagaagttcgcgggttacggctttaacaaatcgcac
tcagccgcatatgcactggtttcttatcaaaccctttggcttaagatgcattatcctgcc
gagtttatggcagcggtaatgaccgccgatatggataacactgaaaaagtagtcggtctg
gttgatgaatgcctgcgcatgaaactcaccgtattaccgccagatatcaactcaggttta
taccgctttaacgtggatgaaaatggcgcgattgtctacggtattggcgcgattaaaggt
gtcggtgaagggcctattgatgcgattttagcggcacgagagaaaggcggtcactttaaa
gacttgtttgatttttgtgcacgaattgaccttaaaaaagtcaataaacgtgttattgag
aaattgatttacgcgggagcacttgatcgattaggcccgcatcgtgcagcattgatggca
tcattgaatgacgccgtcaagtcggcgagccaacaccaccaagcggaggcctttggtcaa
gctgatatgtttggtgtattaaccgatgctccagaagaagttgagcacaaatacactcaa
gttccaccttggccagaaaaagtatggctagagggagagcgtgagaccttaggtttgtat
ttgacggggcacccagttaacgcctatatcaaggaactcaacaagtacgtcagctgtcga
cttaaagacgcgacgccgacacgtcgcgatcaatcagtgactattgctggcttagttatt
gctgcacgagtgatgacaaccaagcgcggtacgcgaatcggtctgatgactttagatgac
cgaagtggccgaatggaagtgatgttgttctcagatgcgctcgatagatatgcagaactt
ctcgaaaaagataaaattttagtggtttccggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtcggcgcgtgaagttatggatctgggtagtgcacgtgaaaaatatgca
cgaggtttatcggtatcgattgatgccaaccagattaacgataaattctttgccgaattt
tcccgtattttggaacctcataaagccggaaccgtaccagtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgaatggcgtgtaacgccgagtgataca
ttgctagacgatttaaaacagttacttggcaaagaccaggtagaactcgaatttaactaa
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