Vibrio alfacsensis: D1115_04350
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Entry
D1115_04350 CDS
T05841
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
vaf
Vibrio alfacsensis
Pathway
vaf02020
Two-component system
vaf02040
Flagellar assembly
vaf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D1115_04350
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D1115_04350
09142 Cell motility
02040 Flagellar assembly
D1115_04350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vaf03000
]
D1115_04350
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vaf02035
]
D1115_04350
Transcription factors [BR:
vaf03000
]
Prokaryotic type
Helix-turn-helix
Other families
D1115_04350
Bacterial motility proteins [BR:
vaf02035
]
Flagellar system
Flagellar assembly proteins
Others
D1115_04350
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
FleQ
HTH_8
AAA_5
AAA_16
HTH_50
bpMoxR
AAA
AAA_7
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AXY00577
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All DBs
Position
I:877292..878677
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AA seq
461 aa
AA seq
DB search
MESCEAVSTDQLGDVDWSGVWAGCIIGNVSAGRAATTLMAHLRQAHHIPLLVLGPFPLSV
DDLPNLVGELEQPLNYPQLSEALRHCKDFLGRKGVNVVASARKNTLFRSLVGQSRGIQEV
RHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAFRNGPFVPINCGAIPPELLESELF
GHEKGAFTGALTSRKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTI
KVNVRVVAATHRNLETMIDDGTFREDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLE
AEGGQPICFTPRAINSLMEHNWPGNVRELANLVERMIILYPNSLVDVNHLPTKYRYSDIP
EFQPETNPFTSVEEQERDVFQDIFSENFSFDAQSDLDHNVNAPQGLPPEGLNLKELLADL
EVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLHR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
ttggagagttgcgaagcagtcagtactgaccagcttggtgatgtagactggtccggagta
tgggctggctgtatcataggcaacgtatctgcggggcgtgcagcgacaacattgatggct
catctaagacaagcgcaccatatccctttgcttgttttggggcctttccctctatcggtt
gatgatctacctaaccttgttggtgaattagagcagccacttaactatccacagttgagt
gaggcgttacgtcattgtaaagattttcttgggcgtaaaggcgtcaacgttgtagcaagc
gctcgtaagaacacccttttccgtagtcttgttggtcaaagccgtggtattcaagaagtt
cgtcatttgatcgaacaagtttctggcacagaagcgaatgtattgatccttggtgagtct
ggcacgggtaaagaagtggttgcgcgtaatattcattaccattctgcattccgtaatgga
ccatttgtgccaattaactgtggtgccatcccacctgagcttttggagagcgaacttttt
ggccatgagaaaggtgcatttactggtgcgctgacttctcgcaaaggccgttttgagttg
gcagagggcggtactatcttccttgatgaaattggcgatatgccgatgtcaatgcaagtg
aaattgctgcgtgttcttcaagagcgatgttttgaacgtgtgggtggcaacacgacgatt
aaagtgaacgttcgtgttgttgcagcaacgcatcgtaacttagaaaccatgatcgacgac
ggcacattccgtgaagatctgttctaccgtctcaatgtattcccaattgaaatgccagcg
cttaaggcccgtaaacaagacattccattacttcttcaagagctgatgactcgattagaa
gcagaaggtggtcagccgatttgttttacgccacgggcaataaactcattgatggaacat
aattggccaggaaatgttcgtgaacttgcgaatctagtagagcgcatgatcattctttat
ccaaacagtctggtggatgtcaatcacttaccaacgaagtatcgctacagtgatattcct
gagtttcagccagaaaccaatccatttacgtctgttgaagaacaagagcgtgacgttttc
caagatattttctctgaaaacttcagctttgatgctcaaagtgatctcgatcacaacgta
aatgccccacaaggcctaccaccagagggattgaacctcaaagagctacttgcagatcta
gaagtgaacatgatcagtcaggcgcttgaagcccaaggtggcgtggttgctcgtgccgcg
gatatgctcggaatgcgccgcaccacattggtcgagaagatgcgcaaatacaatctacat
cgttag
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