Vibrio alfacsensis: D1115_10075
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Entry
D1115_10075 CDS
T05841
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1115_10075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaf03019
]
D1115_10075
03009 Ribosome biogenesis [BR:
vaf03009
]
D1115_10075
Enzymes [BR:
vaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D1115_10075
Messenger RNA biogenesis [BR:
vaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1115_10075
Ribosome biogenesis [BR:
vaf03009
]
Prokaryotic type
rRNA processing factors
D1115_10075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AXY01457
LinkDB
All DBs
Position
I:2056038..2059190
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AA seq
1050 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWSAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA
KEHIKLVRPDFISRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPKKLEAMKEAEGKDTGETEIKPKRIEEPVLKGFAAPQTAP
TPAPTSKPAPVAKKKEAEQEEKPGLFSRLIKALGNFFFGGSEEAKEEPKQEEKKPNRDNK
RPRRDRNDRRRGNQRDNRDNRDNRDNRDNRDNRDNRDNKRRRKPRDEQASEQSEVQQQTN
KQQNRNQKRKPKTQQAEKAQESKANAKVAEKGLLLAAEARTEPKSEESNAKPNAKTEKVK
ERRQRRKLNKAVRVKDQLASEQVIEEPIQAVQPVETPVEKVVEPTLDTEVDTQQDNKQGE
KQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKE
EQVKEENVVAPAVSSASVPAMQGGFACPEMAMGKVIIRHEAPVIAEAPMVVTEAPVVEDN
VQQTVEPIVDAPIVETALTENTASETAETPVEPIAKSVEVPVAKVVTEETESAVVETPVQ
APAVEEKKEASVEVADKAPIAAVETKANVIQVVSKPRASAPMTKAPGPQELREISVAPAP
LKTERYASKGAGSQVATNRASAKMTKPNFS
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgat
ggccagcgacttttcgatcttgatatcgagagtccaggacatgaatctaaaaaagcgaat
atctacaaaggacgtattacacgtatcgaaccaagccttgaagccgcatttgttgattac
ggtgctgagcgtcatggtttcctccctcttaaagaaattgcccgcgaatatttccctgaa
ggttacacttaccaaggtcgtccaagcattaaagaagtgctgactgaaggtcaagaagtc
atcgtacaagtggaaaaagaagagcgtggtagcaagggcgcagctctaactactttcatc
tctctagcaggcagctaccttgttcttatgcctaataaccctcgagctggcggtatttct
cgtcgtatcgaaggtgacgagcgcactcaactaaaagcggcattaagcacactagaactg
cctcaaggcatgggtctaattgtacgtactgctggcgttggtaagagtgcagaagaactt
gagtgggatttgaacgtactacttaaccactggagtgcgattaagggcgcggcagattct
aaccctgctcctttcttaatccatcaagaaagtaacgtcatcgttcgtgcaattcgtgac
tacctacgtcgtgacatcggtgaaatcctaatcgacagcaacaccatttacgagcgtgct
aaagagcacatcaaattggttcgtcctgatttcatcagccgcgttaaaaaatacgaaggc
gaagtgccactatttagccactaccaaatcgaaagccaaatcgaatcggctttccaacgt
gaagtgcgcttgccgtctggtggttctatcgtaatcgacccaacagaagctctaacttct
atcgatattaactctgctcgtgcaacgaaaggcggtgatatcgaagagacagcactgaac
accaacttagaagcagcagacgaaattgctcgtcaattgcgtctacgtgaccttggtggt
ctggttgttatcgactttatcgatatgacaccagtacgccaccagcgtgaagtagaaaac
cgcttacgtgaagccgttcgtctagatcgtgcccgcgttcaaatcggccgtatttctcgc
ttcggtttgttagagatgtctcgtcagcgtctgagcccttctttagcggaagcaagccac
catatttgtcctcgttgtacgggtacaggtgtggttcgtgacaacgaatctctagcactt
tctgttcttcgtctgatcgaagaggaagcgctaaaagacaacactgcgcaagtacttgcc
gttgtaccggtaccaatcgcgtcttacctcctcaacgaaaaacgtcgctctgtgaaccac
attgaacgtaaccaagaagtgaaaataacggttgttcctaactcagatatggaaacaccg
cactttgaagtgatccgtgttcgtgaaggcgaagagtttgacctgctttcttacctactt
ccaaagaaactggaagcaatgaaagaagctgaaggtaaagatacgggtgaaactgaaatc
aaaccaaagcgtattgaagaacctgtactaaaaggttttgctgcgcctcaaaccgctcca
actccagctccaacttcaaaacctgcgcctgtagctaagaagaaagaagcagaacaagaa
gagaagccaggtctattcagtcgtctgatcaaagcactaggtaacttcttctttggtggt
tctgaagaagcaaaagaagaaccaaaacaagaagagaagaaaccaaatcgcgataacaag
cgtcctcgacgtgatcgtaacgaccgccgccgtggtaaccaacgtgataaccgcgataat
cgtgataaccgcgataaccgcgataaccgcgataaccgcgataaccgcgataacaagcgt
cgtcgtaaacctcgcgatgagcaagcgtcagagcagagcgaagtacaacagcaaacgaac
aaacagcaaaaccgtaaccagaagcgtaagcctaaaactcagcaagctgaaaaagctcaa
gagtctaaagcaaatgcaaaagtagcggagaaaggcctgctgttagcggctgaagctcgt
actgaaccaaaatcagaagaaagcaacgcgaagccaaacgcgaaaacagaaaaagtgaaa
gagcgccgtcaacgtcgcaaactgaacaaagctgtacgtgttaaagatcagcttgcatct
gaacaagttattgaagaaccaattcaagcggttcaacctgtagagacgcctgttgaaaaa
gtagtagagccaactttagatacagaagtcgacacgcagcaagataacaagcaaggcgaa
aaacaacgccgtaatcgtcgttcaccacgtcacctacgtgcaagtggtcaacgtcgtcgt
cgcggtcgtgatcgtcgccctaacccattccgcctacgcaagggtggtgttgcctctcct
gagatggcaatgggtaaagtgatgccacgttacattccaaaaccagctcctaagaaagaa
gagcaagtaaaagaagaaaacgtagtagcacctgcagtgtcatcagcatcagtaccagcg
atgcaaggtggctttgcttgccctgaaatggcaatgggtaaagtcatcattcgtcacgaa
gcacctgtgattgcagaagcaccaatggttgttactgaagcaccagttgttgaagataac
gttcaacaaacagtagaaccaatcgtagatgcgcctatcgtggaaacagccttgactgag
aacacggcatcagaaacggctgaaacaccagttgagccaatcgctaaaagcgttgaagtg
ccagtagctaaagtagtaacggaagaaactgaaagcgctgtggtagaaacgccagttcaa
gctccagctgtagaagagaagaaggaagcttctgtagaagtcgctgacaaggctcctatc
gcagcagtagagactaaagcgaacgttattcaggttgtgtctaagccacgcgctagcgca
cctatgacaaaagcacctggtcctcaagagcttcgcgaaatttctgtagcgccagcaccg
ttaaaaactgagcgatacgcatctaaaggtgcgggcagccaagttgcgacaaaccgtgcg
tctgcaaaaatgactaagccaaactttagctaa
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