Vibrio alfacsensis: D1115_11700
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Entry
D1115_11700 CDS
T05841
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf00260
Glycine, serine and threonine metabolism
vaf00460
Cyanoamino acid metabolism
vaf00630
Glyoxylate and dicarboxylate metabolism
vaf00670
One carbon pool by folate
vaf00680
Methane metabolism
vaf01100
Metabolic pathways
vaf01110
Biosynthesis of secondary metabolites
vaf01120
Microbial metabolism in diverse environments
vaf01200
Carbon metabolism
vaf01230
Biosynthesis of amino acids
vaf01240
Biosynthesis of cofactors
vaf04981
Folate transport and metabolism
Module
vaf_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
D1115_11700
09102 Energy metabolism
00680 Methane metabolism
D1115_11700
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
D1115_11700
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
D1115_11700
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
D1115_11700
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
D1115_11700
Enzymes [BR:
vaf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
D1115_11700
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
OKR_DC_1
DegT_DnrJ_EryC1
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
AXY01699
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Position
I:complement(2386311..2387561)
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AA seq
416 aa
AA seq
DB search
MLKRDMNIADYDAELFAAIQEETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYP
GKRYYGGCEYVDKAEALAIDRACQLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS
LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMEQLAFEHKPKMIIGGFSAYSQI
VDWKRMREIADKVDAYLFVDMAHVAGLIAAGEYPTPVPHAHVVTTTTHKTLAGPRGGLIL
SNAGEDMYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEAMEPEFKAYQARVVKNAKAMVGQ
FQERGYKIVSNGTENHLFLVDLIDKDITGKDADAALGAANITVNKNSVPNDPRSPFVTSG
IRVGTPAITRRGFTEDDAKELANWMCDVLDNIGNEEVIEATKQKVLEICKRLPVYA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagcgtgatatgaacatcgcagattacgatgcggaactgttcgcagctatccag
gaagaaacccttcgccaggaagaacacattgaacttatcgcttctgaaaactacacaagt
ccacgtgtaatggaagcgcaaggttcacagctaacgaataaatacgcggaaggctaccca
ggcaagcgttactacggcggttgtgagtacgtagataaagctgaagcactcgctatcgat
cgtgcatgccaactgttcggttgtgagtacgcgaacgtacagcctcactcaggttctcaa
gcaaacagcgcagtttacatggcgcttctgaacccaggcgataccgttctaggtatgagc
ctagcacacggtggccacctaactcacggctctcctgttaacttctctggtaagcactac
aatgtgattccttacggtatcgacgaagcgggtcaaatcaactacgacgagatggaacag
ttagcatttgagcacaagcctaagatgatcatcggtggtttctctgcttactcgcaaatc
gttgattggaagcgcatgcgtgaaatcgcagacaaagttgatgcttacttattcgtagac
atggcgcacgttgcaggtttgatcgctgcaggcgaatacccaacaccagttccacatgct
cacgtagtaacaacgacgacgcataaaacgctagcaggccctcgtggtggtctgatcctg
tcgaatgcgggcgaagacatgtacaaaaagctgaactcagcagtattccctggtggtcaa
ggtggccctctaatgcacgttatcgctggtaaagcagtagcgtttaaagaagcaatggaa
cctgagttcaaagcttaccaagctcgcgtagtgaaaaacgcaaaagcaatggttggccaa
ttccaagagcgtggctacaagatcgtatctaacggcacagaaaaccacctatttctagtt
gacctaatcgacaaggatattacaggtaaagatgcagatgcagcactaggtgcagcaaac
atcacagtaaataagaactctgtaccaaacgatccacgtagcccattcgtaacgtctggt
atccgcgtaggtacaccagcaatcactcgtcgcggcttcactgaagatgacgcgaaagag
ctagcaaactggatgtgtgacgtactagataacatcggcaacgaagaagttatcgaagca
acgaaacagaaagttttggagatctgtaagcgtctaccagtttatgcgtaa
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