Vibrio alfacsensis: D1115_13905
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Entry
D1115_13905 CDS
T05841
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D1115_13905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_13905
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1115_13905
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D1115_13905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
PriA-like_WH
AAA_30
AAA_19
TrmB
MarR
GPAT_C
TrwB_AAD_bind
Zn_ribbon_6
Zot
DUF1258
HypA
Motif
Other DBs
NCBI-ProteinID:
AXY02077
LinkDB
All DBs
Position
I:2859077..2861278
Genome browser
AA seq
733 aa
AA seq
DB search
MRPSIARVALPVPLDKQFDYIIPGHLFPIIGGRVSVPFGRQTLVGIVTTMVNHSDFPKEQ
LKPIKAVLDTQPIWSEKLYSLLTWCSHFYQYPLGDTLHNAMPVALRKGKPADFATLQEWQ
ITASGKDKLMQGLGRAVKQQHALQMLINGAIPHQEFVDQEIASTVLKSLEEKGWIESIEK
KPTIIKWGQQVECNIEKPKLNHEQALAIASVNSQTGFACYLLEGVTGSGKTEVYLNLIKP
ILEKGKQALVLVPEIGLTPQTINRFKRRFNVPVDVIHSGLNDTERLNAWLSARDKAAGII
IGTRSALLTPFADLGIIIVDEEHDASYKQQDSLRYHARDVAVMRAHKEQVPIVLGSATPA
LETLHNALSGKYHHLTLTKRAGSAVPTTNKVLDVKGQFLESGLSATLIAEMRKHLKAGNQ
VMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGCG
STHLVTVGVGTEQLEQQLTQLFPEYKAIRIDRDSTRRKGSLEDALESIRKGEYQILIGTQ
MLAKGHHFPNVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHH
PEHSLLQALLQKDYRHFAMTALEERKLAQLPPYSFLTLFKAEANQNEIVEDFLRQVRFTL
ESHPLFDESCMVLGPTPSPLAKRAGKYRWQLLLQTQHRSLMQKLLSSAKPAIELLPNAKK
VRWNLDIEPQDLS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccatccatcgcccgagtggcactgccggttcctctcgacaaacaatttgactat
atcattccgggtcacctattcccgattatcggtggacgcgtatctgtgccttttggtcgg
caaaccctagtgggcatcgtcacgacaatggtgaatcactcagattttccaaaagagcag
cttaagccaatcaaagcggttttagacactcagccaatatggtcagaaaagctctattct
ttgctgacttggtgtagccacttttatcaatatcccctcggcgacacactgcacaatgca
atgccagtcgcgttgcgtaaaggtaagccagcagattttgctacgctgcaagagtggcaa
atcaccgcctctggtaaagataagctcatgcaaggtttggggcgcgcagtcaaacagcaa
cacgctttacaaatgctgatcaatggggctatcccacatcaagagtttgttgaccaagag
attgcgtcaacggtgcttaagtctttagaagaaaaaggctggatagaaagtattgaaaaa
aaaccaacgatcatcaaatggggccagcaagtagagtgcaacattgaaaaacctaagcta
aatcatgaacaagcactcgctattgccagcgtgaatagccaaacgggttttgcctgctat
ttattagagggggtaacgggctcagggaaaactgaagtctacttgaacctcattaaacca
atactagaaaaaggcaaacaagcactcgtattagtgccagagattggcctaacgccgcaa
accattaaccgctttaaacgtcgctttaatgtgccagttgatgtgattcactctggcttg
aatgataccgaacggctgaatgcatggctctctgctcgagacaaagcggcaggaattatc
atcggtactcgctcagccctgcttaccccttttgccgatctcggcatcattattgttgat
gaagagcacgacgcctcttacaaacaacaagacagtttgcgttaccacgcacgcgatgtc
gccgtcatgcgtgcccataaagagcaagtgccgatcgtattaggctccgctaccccggct
ctcgaaacactgcacaatgcactttcaggtaagtatcaccatttaactctgacaaagcga
gcaggctcagccgtacccacaaccaataaagtgctcgacgttaaaggtcagtttttagaa
agtggcttatccgcaaccttaattgccgagatgcgcaagcaccttaaagcgggcaatcag
gtcatgttgttccttaatcgtcgtggtttttctccggcattaatgtgccatgagtgtggc
tggattgcggaatgtaaacgctgtgatgcctattatacgtatcatcagtacagcaatgag
atacgttgccatcattgtgggtcacaacaacctatcatccatcagtgtcaggggtgcggt
tcaactcacctagtcaccgtgggtgttgggacagaacagctcgaacaacaactgacgcaa
ctattcccagaatataaagctattcgtatagatagagacagcactcgtcgtaaaggcagc
ttggaagatgcgcttgaatctattcgtaaaggggaatatcaaatcctcattggtacgcag
atgttagcgaaaggccatcactttcctaatgtgacgctggttgccttactcgatgtcgac
ggttctctctatagcagcgattttcgtgcatctgaacgtttagcgcagttattcattcaa
gtggcagggcgtgcaggacgagcaagcaaacctggtgaagttatcttacagacccaccat
cccgaacacagtttgcttcaagctcttttgcaaaaagactatcgtcactttgcgatgacg
gcgctagaagagcgtaaattggcccaacttccgccttatagctttttaaccttattcaaa
gcggaagccaatcaaaatgagatcgtcgaagacttcctgcgccaagtaagatttacgcta
gaatcgcatccattgttcgacgaatcttgcatggtgttaggcccaacgccctcaccactg
gctaaacgtgcgggtaagtaccgttggcaattgttattacaaactcaacatcgttcattg
atgcaaaagttattgagcagtgcgaaacctgctattgagttgttgccaaatgccaaaaag
gttcgctggaatttagacattgaaccacaagacctcagctag
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