Vibrio alfacsensis: D1115_14715
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Entry
D1115_14715 CDS
T05841
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03030
DNA replication
vaf03410
Base excision repair
vaf03420
Nucleotide excision repair
vaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1115_14715
03410 Base excision repair
D1115_14715
03420 Nucleotide excision repair
D1115_14715
03440 Homologous recombination
D1115_14715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vaf03032
]
D1115_14715
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_14715
Enzymes [BR:
vaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D1115_14715
DNA replication proteins [BR:
vaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1115_14715
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
D1115_14715
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1115_14715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AXY02206
LinkDB
All DBs
Position
I:complement(3020159..3022948)
Genome browser
AA seq
929 aa
AA seq
DB search
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASDRIAV
VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT
LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSLTKLYENLDDIAALGFRGSKTMAKKLVDNK
DNAMLSYELATIKLDVELEETPESLLKAEPSKDELIKLYGQLTFKSWLNELLDGGSGVVE
ADESTGAVRGSSVSKADMDTSAVKIDRSQYETILDEASFMAWLDKLKASDLFAFDTETDS
LDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPQQLDREWVLAQLKPILEDDTQAKVGQN
LKYDASVLARYGIEMKGIKHDTMLASYVYNSVGGKQDMDSLALRFLQHSCISFEQIAGKG
KNQLTFNQIELDEASPYAAEDADVTLRLHNRLFANLEQDDKLKAVYEEIEIPLVPVLSRI
ERTGVLIDDMKLSTQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVLK
KTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYH
QAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPAGYKILAVDYSQIELRIMAHLSGD
QALLDAFRHGKDIHAATAAEIMGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIP
RGEAQAYMDKYFERYPGVMQYMEDTRSAASVQGYVETIFGRRLHLPEIQSRNGMRRKAAE
RAAINAPMQGTAADIIKKAMLLVDQWIQEEGNDRVKLLMQVHDELVFEVEESSLVEIESK
VQELMESAADLKVPLVADAGHGDNWDQAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtattcctgaaaacccgttgattcttatcgatggttcttcttatctatatcgc
gcttttcacgcttaccctggcacgatgagtaacggtgaaatcccaactaacgcagtgtat
ggcgtagtgaatatgctacgtagcatgatgcgccagtttgcttctgatcgcatcgccgtg
gttttcgatgcgaaaggtaaaactttccgcgacgatatgtacccagaatacaaagcaaat
cgtccgccaatgccggatgatctccgctgccaaattgaaccgttgcataatgttatacgg
gcaatgggtctcccacttatttgtataccaggtgttgaagctgatgacgttattggcacg
cttgcgtatcaagcatctcaacaaggtatgcctgtattgatcagtactggcgacaaagat
atggcgcaacttgtggatgacaacattacactgatcaacaccatgacgaatgttgtgatg
gatcgtgagggtgtgattgaaaagtttgggattccaccagagttgattatcgactacctt
gctttgatgggcgataaagtggataacatccctggcgttccaggtgtaggtgataaaacg
gcgactgcactactgcaaggtatcggcagtttaactaagctgtacgaaaaccttgatgat
attgcagcacttggttttcgtggctcaaagaccatggcgaagaagctcgttgataataaa
gacaatgccatgctgtcttatgagctagccaccatcaagctcgatgtagaactggaagaa
acgccagaatcattactaaaagcagaaccaagcaaagatgagctgatcaaactgtacggt
cagttgacgttcaaatcttggttgaatgagcttttagatggcggttcgggtgttgttgaa
gcggatgagtcaactggtgcagtgcgcggtagttcagtatctaaagcggacatggacacc
tcagcggtgaagattgatcgtagccaatacgaaactattttggatgaagcctcattcatg
gcttggctagacaaactaaaagcgtctgacctgtttgcgtttgatacagaaaccgacagc
ctagattacatggtggcaaaccttgttggtctgtcattcgctattgatgagggcattgcg
gcttacgttcctgtcgcgcacgattacctagatgcaccgcagcaactcgatcgtgagtgg
gtgcttgcacaacttaaaccgattcttgaagatgatacccaagcgaaagtgggtcagaac
ctgaaatacgacgcctcagtattggctcgctatggcatcgagatgaaaggcatcaagcac
gataccatgttagcgtcctacgtttataacagcgttggtggcaagcaggatatggatagc
cttgcgctgcgtttcctacaacacagttgtatttcgtttgaacagattgcaggcaaaggc
aagaaccaactgactttcaatcaaatcgaattggatgaagcgtcaccatacgcagcagaa
gacgctgatgtaacacttcgcctgcacaaccgtctatttgcaaatcttgagcaagatgac
aagctaaaagccgtttacgaagaaatcgaaataccgttggtccctgtgctttctcgcatt
gagcgcactggcgtattgatcgatgacatgaagctcagtacacagtcagtcgaaattgct
gctcgcttagacgagttagagcagaaagcttatgaaattgcggaacaagagttcaacatg
aactcgccgaaacagcttcaagcgattctatttgaaaaaatgggcttgccggtgctcaag
aagaccccatcgggcacaccatcgacgaatgaagaagtactgcaagagctggctttggat
tacccactaccaaaactgatcttggaataccgtggtttagcgaagttaaaatcgacgtac
acagacaagctaccaaagatgattaacccatcaacaggtcgtgtacacacttcttaccac
caagccgtaaccgcgacgggtcgtctatcgtcgacggatccaaacttgcaaaatattcca
atccgcaatgaggaagggcgtcgaatccgtcaggcatttattgcgccggctggttataag
atcttggcggtcgattattctcagattgaattgcgcatcatggcgcatctatcaggagac
caagcactgcttgatgcgttccgtcacggcaaagatatccatgcagcaaccgctgcagaa
atcatgggtgtgcctattgaccaagtatcaagtgagcagcgacgtcgtgctaaagcggtt
aacttcggccttatctacggtatgagtgcatttggccttgcgaagcagcttggtatccct
cgaggtgaagcgcaagcttatatggataaatacttcgaacgttacccaggagtaatgcag
tacatggaagacactcgtagtgctgcttcggtacagggctatgtcgagaccatctttgga
cgtcgcttgcatttaccagaaattcaatcgcgtaacggtatgcgccgtaaagctgctgaa
cgcgcagcgatcaacgcaccgatgcaagggacagcagcggatatcatcaaaaaggcgatg
ttgcttgttgatcagtggattcaagaagagggcaatgatcgagtgaaacttctgatgcaa
gtacacgatgaactggtgtttgaagtcgaagagtcgtctttagtcgaaattgaaagtaaa
gtacaagaattgatggaatctgcagcagatttgaaagtgcctcttgttgcggatgcaggt
catggtgataactgggatcaagcgcactag
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