KEGG   Vibrio alfacsensis: D1115_16735
Entry
D1115_16735       CDS       T05841                                 
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vaf  Vibrio alfacsensis
Pathway
vaf02020  Two-component system
vaf02040  Flagellar assembly
vaf05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    D1115_16735
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    D1115_16735
  09142 Cell motility
   02040 Flagellar assembly
    D1115_16735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vaf03021]
    D1115_16735
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vaf02035]
    D1115_16735
Transcription machinery [BR:vaf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     D1115_16735
Bacterial motility proteins [BR:vaf02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    D1115_16735
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r4_2 Sigma70_r3 EIAV_Rev HTH_Tnp_4 CamS
Other DBs
NCBI-ProteinID: AXY02667
UniProt: A0ABM6YXZ6
LinkDB
Position
II:complement(327492..328220)
AA seq 242 aa
MLEMNLQESYTSADEAHTASRAIDENALLQRHQVMVKRVVNQLRIHATSHCSVEDMQQIG
LIALIEAGRRYGDVDDPHFPAFAVCRVRGAILDELRRLDWRSRKTRQQAHELNDVTRDLT
RALGRLPTDTEIINALGTDEQDYYNRQNAALAGEMQSLDQLMESGNDNQFGGQYDGMEHE
HIRRSLETALNKLSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQLNQLL
SS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgttggagatgaacttacaggaaagttatacctcagcagacgaagctcacaccgcgtct
cgtgctattgatgaaaatgcgctgctccaacgccaccaagtgatggttaaacgagtcgtc
aatcaattgcgaatacacgcgacttctcattgcagcgtcgaagacatgcagcagattgga
ttaattgcgcttatcgaagcaggccgacgctatggtgacgtagacgaccctcattttcct
gcatttgccgtttgccgagtgcgaggggcgattttggatgaactacgacgtctcgactgg
cgctctcgtaaaactcgtcaacaagctcacgagctcaatgatgtgacccgcgatcttaca
cgtgctttgggacggttacctaccgacaccgaaatcatcaacgctttggggaccgatgag
caagattattacaacaggcaaaatgcagcattagcgggcgaaatgcaaagtcttgatcaa
ctgatggaaagtggtaacgacaaccagtttggcggtcaatatgacggtatggaacatgaa
catatccgtcgaagcttggaaactgcattaaacaagttgtccaaacgagatcaactgttg
ctgacgctgttttatcaacacgaactcaatttacatgaaatcgcccttgtgctcgatctg
actccacctcggatctgccagctgcacaaacaagcgcttaagcaactcaatcaattactg
tcctcttag

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