Vibrio alfacsensis: D1115_18365
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Entry
D1115_18365 CDS
T05841
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vaf
Vibrio alfacsensis
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vaf03400
]
D1115_18365
DNA repair and recombination proteins [BR:
vaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D1115_18365
Archaeal homologous recombinant proteins
D1115_18365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
Prefoldin_2
AAA_21
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXY02930
LinkDB
All DBs
Position
II:723255..726311
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAQTETIEFDKLGTNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGIQMRCDMASPTLPTEVTLEFSLNGKGYRVIRSPEQEAPKARGEGMTTRKHTAALYEI
TSEEKLITSKTTQVKTEITNIIGLNETQFRQVMVLPQGKFRELLLATSKEREEIFGQLFQ
TDIYKKIEYALKDKASSISKAKGEFDNQIRGALQVAEVSTEQELFERQEETFSELEKAQR
QEQESLAQLNTVKSDIQKAETLNSEFKKREQAELALKQHAQQSEAISTRQLQLDNAKKAS
KIELPYVALKNSNKQVHELQQKVAKLSQDVTLADDAAKAKDAALKTAKEQANQLPKLTEY
QYQLESLKGKLVEKEALDKAIATGLVQKSEFEETLKKYVALKEKLSQEALQGQQALDQAR
VDVASIGSVEAEIKQQQRLMQDLQKLSGLNQELTKLEAFTPNKQASVNEAKSRYEALQRS
ADSLELNWHNAQAAVLAQRLQTGEMCPVCGSLDHPQPAQFVGEEVTKEQVQQARNREREG
QVALNQLSNQLDQHNIAIAQYKQQIEQITEELGPHATMDLGGLQASMQPLNARLQQLSSI
NLVQLEQNVNELNQRCVVGESKINDLQNQMAANESTVKANQEQLTKLVSTFDEKYASLEV
LEQDIATVKAQIIELNRGLEDTQNQLQQAILAKANIESQLTTHQQWLKEATEQLDAAKTD
WETALKMSPFADEAQFLQNKVDEQMLLTWQQEIDAFTQSKIKLEQTLSDLEQALKDAEKP
DMEALNAKLTTISGAYLVARNQLDSHRSLFERLEKVRKDITSLHEKNAKLEDEYKVFGTL
YDVASGKTGSRVSLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTDGFKGAAGRGLD
LVVEDGYTGKTRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQSGRMIGVISHVSELKEQMAQRIDVAPSRLGSTVSVKSQMVLDS
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaattaaactgacgatgcaggcttttggtccgtttgctcaaacggagaccatc
gagttcgataagcttggcactaacccgttgtttttgattaatgggcctactggatcggga
aaaacgtcgattcttgatgcaatctgctttgcgctttacggcgaaacgacaggcaacgaa
cgccaaggcattcaaatgcgttgtgatatggcatccccaacgttgccgacagaagtgacg
cttgaattttctctgaatggcaaaggttatcgtgtcattcgttctccagaacaggaagca
ccaaaagcccgcggagagggcatgacaacacgcaaacatacggctgcattgtatgaaata
acgagtgaagaaaagctcatcaccagcaaaacaacccaagtaaaaacagagattaccaac
attatcggtttgaacgaaactcagttccgccaagtgatggtgctccctcagggtaagttt
cgagagttgctattagcgacatcgaaagagcgagaagagatctttggtcaactgttccaa
acggatatctacaaaaagattgaatacgcgcttaaggataaggcaagctcaattagtaag
gcgaaaggcgagtttgataaccaaattcgtggtgctctgcaagtggcggaagtcagcaca
gagcaagagttgttcgaacgacaagaagaaacgttttcagagttagagaaagctcaacgt
caagagcaagaatcattagctcagcttaatacggtcaagtctgacattcagaaagcagaa
acgctcaatagtgagtttaaaaaacgagagcaagctgaacttgctttgaaacaacacgct
caacagagtgaagcgatttcaactcgtcagttacagttagacaatgcgaagaaagcgagc
aagatcgagttgccttacgtcgcgctgaaaaactcgaacaaacaagtacatgagttgcag
caaaaggtggcgaagctttctcaagacgtgactttggcagatgacgctgccaaagcaaaa
gatgcagcacttaaaaccgcaaaagaacaagcgaatcaattgcccaagctgacagagtat
caataccaactcgaaagtctaaaaggaaagttggttgaaaaagaggcgctggacaaagcg
attgcaactggccttgtgcaaaagtcagagtttgaagaaacactgaagaaatatgttgcg
ttaaaagaaaagctctcgcaagaagcgcttcaaggtcaacaagcgctggatcaagctcga
gtggatgtggcgagtatcggcagtgttgaagctgagataaagcagcagcaacgtttgatg
caagatctccagaagctgagtggtttgaaccaagagctcacaaaattggaggcctttact
ccaaataaacaggcatccgttaatgaagccaaatctcgatacgaggcgcttcagcgttcg
gcagattcgcttgaattgaactggcacaatgctcaagcagccgtattggctcagcgccta
caaactggtgaaatgtgcccagtgtgcggcagtctcgatcaccctcaacccgcacagttt
gttggtgaggaagtgacaaaagagcaagtgcaacaggcacgaaatcgagaacgagagggg
caagttgctcttaaccaactgagtaatcaattggatcaacacaatattgcgatcgcgcaa
tacaagcagcaaatagaacaaataacagaagaacttggaccacatgcaacaatggatttg
ggcggtttacaagcttcaatgcaaccgctcaatgcgcgtttacagcagttgtcgtcgatc
aacttggttcagcttgagcagaacgttaatgagctaaatcagcgttgtgtagtcggtgaa
agtaagatcaatgatcttcaaaaccaaatggctgcgaatgaatcgacggttaaagcgaat
caagaacaacttacgaagcttgtctctacatttgatgagaaatacgcgtctcttgaagtt
ctagaacaagacattgcgacggttaaggcacaaataatcgagttgaaccggggtttagaa
gacacacaaaaccaattgcagcaggcgatattggccaaggcgaacatcgaaagtcaattg
accacccatcaacaatggctcaaagaagccacagaacaattggatgcagcgaaaactgat
tgggaaaccgcgttaaagatgagcccttttgctgatgaagcgcagttcctccaaaataag
gtagatgaacagatgttgctgacttggcaacaagaaatcgatgcattcacacaatcaaaa
atcaagctagaacaaacgctttctgacctcgagcaagccttaaaagatgctgaaaagcct
gatatggaggcgcttaacgctaaattaaccacgatttctggggcgtaccttgtagcaaga
aatcagcttgatagtcatcgctcgctctttgagcgtttagagaaagtaagaaaggacatt
accagcttgcatgaaaaaaatgccaagcttgaagatgagtataaagtgtttggcaccctg
tatgatgtcgccagtggtaagacgggaagccgcgtcagcctacaccgatttgttcttggt
gttttattagacgatgttttgatacaagcatcgcagcgattaagcctgatgagcaaaggt
cgttatatcttagctcgtaaaaccgatggttttaagggggcagcaggtcgaggtttggat
ctggtggttgaagacgggtataccgggaaaacacgtgatgttgctacattgtctggcggt
gaatcattcatggccgcgctagccttggcgcttggtctgtccgatgtggttcagtcatac
agcggcggtattcgtttagataccctgtttattgatgagggcttcggcagcctagatccg
gaatcgttggatcttgcaattcaaacgttggttgatttgcagcaaagtggtcgaatgata
ggcgtcatatcccatgtgtcagaacttaaagaacagatggcgcaacgcattgatgtagca
ccatcacgtttaggttctaccgtttcagtgaagtctcagatggtattggattcttaa
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