Vibrio alfacsensis: D1115_18630
Help
Entry
D1115_18630 CDS
T05841
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vaf
Vibrio alfacsensis
Pathway
vaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1115_18630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vaf03019
]
D1115_18630
Enzymes [BR:
vaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D1115_18630
Messenger RNA biogenesis [BR:
vaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1115_18630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Helicase_RecD
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXY02973
LinkDB
All DBs
Position
II:782162..783433
Genome browser
AA seq
423 aa
AA seq
DB search
MRFIMSVNFADLGIEQQLVDTLSGLNIVSPTPVQEMSIPHVLAGKDLLAAAQTGTGKTAA
FGLPIIQSVQQKQRNGTPQALILVPTRELAQQVFDNLTQYAANTDLKIVCVYGGTSIGVQ
KSKLNDGADILIATPGRLLDHLFNGNVNISKTTTLVLDEADRMLDMGFWPDLQRILRRLP
QTRQIMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVEQMVHPVDKKRKRELLAY
LIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKSGKVRA
LIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLH
AIENLLDKRLPQEWLAGFEPSLIEEVEPERNHGGRSKSRSAEKRKMKAKLAIHKTAEKAE
NKR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttatcatgtccgttaatttcgctgatcttggcattgaacaacagcttgttgat
accctaagcggtttgaatatcgtgtcaccaacaccagtacaggaaatgtcaattcctcac
gtattggcaggaaaagatctgctagctgcagcacaaaccggtacgggtaagacggcagcc
tttggtttaccaattattcagtcggttcagcaaaaacagcgaaatggcacgcctcaagct
ttgattttggttccgactcgtgagcttgctcaacaggtgtttgataatctaacccaatat
gcagccaacaccgatcttaaaattgtgtgtgtgtatggtggcactagcattggggttcag
aagagtaagttaaatgacggcgcagatatattgattgcgacacctggtcggttacttgat
catctatttaacggcaatgtaaacatctcaaaaacaacaacgcttgtattggatgaagca
gaccgaatgcttgatatggggttttggccagatttacaaagaatcttgcgtcgtctaccg
caaactcgtcaaattatgttgttctctgcgacatttgaaaaacgcattaaaaccatcgct
tacaaactcatggactcgccggttgaggtagaagtttctcctgcgaataccacagcagaa
accgttgagcagatggttcatcccgttgataaaaagcgtaagcgtgagttacttgcttac
ttgattggttctcgtaactggcagcaggtgctggtgtttactaaaactaaacagggcagt
gacgaactggctaaagagctcaaattggatggtattaaagcggtttcgattaacggagac
aaatctcaaggagctcgtcaacgtgcgttagatgagtttaagagcggtaaagttcgcgct
ttgattgccactgatgttgctgctcgcggtcttgatattcaagagcttgagcaagtggtt
aattttgatatgccattcaaagcggaagattatgtgcatcgaattggccgtactggccgt
gcgggtaaatcgggcttagcggtctctttaatgagtcgtgacgaagaatacttgcttcat
gcgatcgagaatctgttggacaagcgtcttcctcaagaatggttagcgggctttgagccg
agtctgattgaagaggttgaaccagagcgtaatcatggtggacgcagtaagagccgttct
gctgaaaagcgtaagatgaaagcaaaattagcgattcacaaaaccgcggaaaaagccgaa
aataaaaggtga
DBGET
integrated database retrieval system
