KEGG   Vibrio alfacsensis: D1115_22880
Entry
D1115_22880       CDS       T05841                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
vaf  Vibrio alfacsensis
Pathway
vaf03030  DNA replication
vaf03430  Mismatch repair
vaf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D1115_22880
   03430 Mismatch repair
    D1115_22880
   03440 Homologous recombination
    D1115_22880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vaf03032]
    D1115_22880
   03400 DNA repair and recombination proteins [BR:vaf03400]
    D1115_22880
Enzymes [BR:vaf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D1115_22880
DNA replication proteins [BR:vaf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     D1115_22880
DNA repair and recombination proteins [BR:vaf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     D1115_22880
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2
Other DBs
NCBI-ProteinID: AXY03725
UniProt: A0ABM6Z0X3
LinkDB
Position
pVa1:complement(95926..96540)
AA seq 204 aa
MPQANSVVVLDFETTGLSPNLGDRAIEIGAVKLVNGEVVDSFQQLMNPGFRVSSFIESYT
GITNNMLRTAPSCDEVMASFSEFIAGENLIAHNASFDKRFLDAELDRISLGYTGEFACSL
LVARRLIQNAPSHKLGELVRYKSIDNDGVFHRALADAQMTSKLWLSMIADLEQYGVKKPS
FQFMQTISKTAKGKVDLLLTRSRA
NT seq 615 nt   +upstreamnt  +downstreamnt
atgcctcaagcaaattccgtcgtcgtactcgactttgaaaccacgggcctttctccgaat
ttgggtgaccgcgcaatagaaattggtgcggttaaattagtcaatggtgaggtagtggat
agttttcagcaactcatgaacccaggctttcgagtgagttcattcattgaaagttatacg
ggtatcaccaataacatgctacgaacagcaccaagttgtgatgaagtgatggcatccttt
agtgaattcattgcaggtgaaaaccttatcgctcacaacgcatcgttcgacaaacgattt
ttagatgcagaactcgatagaatcagccttggttatacaggcgagtttgcgtgctcctta
ctggtggcaagaaggctgattcaaaatgcaccttcgcacaaattaggtgagctagttcgt
tacaaaagcatcgataacgacggtgtctttcacagagcattagccgacgcgcaaatgaca
tccaaactttggctcagcatgatcgcggatctagagcaatacggggtcaaaaaaccaagc
tttcaatttatgcaaaccattagcaaaactgcaaaaggtaaagtggatctactgctcact
agaagcagagcttag

DBGET integrated database retrieval system