Vibrio alginolyticus: N646_0087
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Entry
N646_0087 CDS
T02840
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vag
Vibrio alginolyticus
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vag03032
]
N646_0087
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_0087
Enzymes [BR:
vag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
N646_0087
DNA replication proteins [BR:
vag03032
]
Prokaryotic type
DNA Topoisomerases
N646_0087
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
N646_0087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
AGV15920
UniProt:
A0A2I3BYH8
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Position
1:100081..102711
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AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVNELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKAD
FKLLVAQKDGSAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSNVGVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVAELARFEERLPEKFKYLATAPQEDPDGRPTVVRFSRKT
KENYVRSEENGKPSGWTALFVDGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacgataaataagtac
cttggtaaagactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatctcaactaaagggatgagtccggaa
gagaaagcgcgcgttaaaaaagagaaagaccgcaaagcgttgatcaaaaagatggggatt
aacccatatcatgactgggaagcgaattaccaaatccttccaggcaaagaaaaagttgtc
aacgaactacaaaaactcgccaaagacgcagattgcgtttatctcgcaaccgatttggac
cgcgaaggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgtgtagtttttaacgaaattacgaaaaacgcgatccaacaagctttccagaca
cctggcgagctgaacatggatggtgtaaatgcccaacaagcacgtcgcttcatggaccgt
gtcgttggttttatggtttcacctctactttggaaaaaagtggctcgtggcttatctgct
ggtcgagtgcagtctgttgcggtgaaattgttagttgagcgtgagcgtgagattaacgcg
tttgtaccagaagaattctgggacattcatgcgaatacgaaaacgaaagacaaagcggac
tttaaactgcttgttgctcagaaagacggttctgcgtttaagccagttaatgaggcagaa
accaaagcagcgatgtctgtacttgagaatgcaagttacgaagtatgtaagcgtgaagac
cgccctacaaagagcaagccttcagcaccttacatcacctctacgcttcaacaggcagcg
agtacacgcctgggctacggcgtgaaaaagaccatgatgctagctcagcgcctctatgag
gccggttacatcacttatatgcgtactgactcgactaacctaagtgccgaggctgtggac
gctgtacgtgactttattggttctgagtttggtgataagtacctaccagcgaaaccattg
acgtacggtagcaaagaaggggcacaggaagcgcacgaagcgatccgtccttcaaatgtg
ggtgttaaggcggaagacctgcaaggtgtcgatgctgatgcgcacaaactttacgctttg
atttggaatcagtttgtagcgtgtcaaatgacgccagcagaatacgattcaacaaccatc
agcgtaaaagcggcagaatacacgcttaaagcgaaaggtcgtatccttaaatttgacggc
tggactcgtgtacagcgtccaatgggcaaaaacgaggatacaatccttcctgcggtacaa
cttggcgataagctaagcttagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctacactgaagcagcactggttaaagagctggagaaacgaggtattggtcgtccg
tcgacttacgcatcgatcatttctacgattcaagatcgtggctacgtgaaagttgatcag
cgccgtttctacgctgaaaaaatgggtgaaattgttactgaccgccttgatgacagcttt
aacgatttgatgaactacgactttactgcgcgtatggaacagaaattggaccaaatcgct
gaaggtgaagtgaactggaaagctgtgttagacaacttctttgctgattttactggcgat
cttgaaaaagcggagctggatgagtcagaaggcggtatgaagttaaaccacatcgtcatg
acggatatcgagtgtccgacgtgtagccgtccaatgggcatccgtactgcttcgacaggt
gtgttcttaggctgttcaggttacgcgttaccaccaaaagagcgttgtaagacaaccatc
aacttgggtgacgaagaaggtattattaacgttctagaagaagacgttgaaaccgcagct
cttcgtgctaaaaagcgttgtccgatctgtgaaacagcgatggacgcttacctgattgat
gacaagcgtaagatgcatgtttgtggtaataacccgaactgtgaaggctaccttgttgaa
tacggcgagttcaaagtaaaaggctacgatggtccagttgttgaatgtgacaaatgtggc
tctgatatggtgcttaagaacggtcgctttggtaaatacatggattgtacgagcgaaacg
tgcaagaacactcgtaagatcttgaagaatggcgaagtcgcgcccccgaaagaagatcct
gttcatttccccgagttgccatgtgaaaactcagatgcgtatttcgtacttcgtgatggt
gcttcaggtctatttatggcggcaagcaacttcccgaaatcgcgcgagacacgtgctcct
ttggttgctgaactggcacgttttgaagagcgtttacctgagaagttcaaatacctagcg
accgcaccgcaagaagatcctgatggtcgtcctacagttgtacgctttagtcgcaaaaca
aaagagaactacgttcgttcggaagagaatggcaaaccatctggttggacagcgctcttt
gttgacggtaagtgggaagtcactgataagcgtaaaaaagcgaaagcataa
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