Vibrio alginolyticus: N646_1138
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Entry
N646_1138 CDS
T02840
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N646_1138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vag03019
]
N646_1138
03009 Ribosome biogenesis [BR:
vag03009
]
N646_1138
Enzymes [BR:
vag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N646_1138
Messenger RNA biogenesis [BR:
vag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N646_1138
Ribosome biogenesis [BR:
vag03009
]
Prokaryotic type
rRNA processing factors
N646_1138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGV16971
UniProt:
A0A2I3C798
LinkDB
All DBs
Position
1:1223270..1226335
Genome browser
AA seq
1021 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEELEWD
LNVLLNHWGAIKGAADSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEH
IQLVRPDFLNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR
EAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLALSVL
RLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETPHFE
VIRVREGEEFDLISYLLPKKLEAMKEAEGKEPAEVDVKPKRIEEPVLKGFAAPSQTAPAP
AAKPAPEAKKKEQDVEQEEKPGLFSRLFKALGSFLFGGSEETKEEQKPQEEKKPNRDNRR
NKRDRNDRRRNNNQRDNRDNRDNRDNRRRRKPRDEQANEQNEAQQQTNKPQNRNQKRKPK
AQQADKAQEQKANAKVAEKGLQLAAEARTETKPEESKPKQQNAKAEKVKERRQRRKLNKS
VRVKDQEAIEKKAEETAVKTQETVEAKVEKPTEAAVEAQQDNKQAESKQRRNRRSPRHLR
ASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPAPKKEERVKEEAVAAVPA
IQGGFACPEMAMGKVIIRREQPVVTDAPVVEHKVQETVEAKVEAPVVEAPVVETVITEKA
ESAVIETASVEPIVETPVTEHAEPVDAIVETAPAEEPIVEAEKEIAAEAPVDKPEPKVEA
IKVAAKLNASAPMTKAPGPQELREITVAAAPFKTERYQAKGAGSQVAKNRASAEMTKPNF
N
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaacgcaactcaaaaagaagagttgcgtgtcgctctggttgatggccagcga
cttttcgatcttgatatcgagagtccaggtcatgaatctaaaaaagcgaatatctacaaa
ggacgtatcacacgtatcgaaccaagcttagaagccgcatttgttgattacggcgccgag
cgtcacggtttcctccctctcaaagaaattgcccgcgaatatttccctgaaggttacacc
taccaaggtcgtccaagcatcaaagaagtgctaacggaaggccaagaagttatcgttcaa
gtggaaaaagaagaacgtggaagcaagggcgcagctcttactactttcatttctcttgct
ggtagttaccttgttctgatgcctaacaaccctcgtgctggcggtatttctcgtcgaatc
gaaggtgacgagcgtactcaactaaaagccgcattaagtactttggaactgcctcagggc
atgggcctaatcgtacgtactgctggcgttggcaagagtgctgaagagcttgagtgggat
ttgaatgtactacttaaccactggggtgcaatcaaaggtgcagcggactctaaccctgct
ccattcttaatccaccaagaaagtaacgttatcgttcgtgcaatccgtgactatttgcgt
cgtgatattggcgaaatcttaattgatagcaacaccatctacgaacgtgcaaaagagcac
attcaattggtgcgccctgatttccttaaccgcgttaagaaatatgaaggcgaagttcca
ctattcagccactaccaaatcgaaagccaaattgaatcggctttccaacgtgaagtgcgt
ctgccatctggtggttctattgttattgacccgactgaagcactaacgtctatcgatatc
aactctgctcgtgcaaccaagggcggcgatattgaagaaacagctctaaacacgaaccta
gaagcagccgacgaaattgctcgccaattacgtctacgtgacttgggtggcttagtggtt
atcgactttatcgatatgaccccagttcgtcaccaacgagaagtagaaaaccgtctacgt
gaagccgttcgtcttgatcgcgctcgtgtacaaatcggtcgtatttctcgctttggtttg
ttggagatgtcacgccagcgcttgagcccttctcttgcagaagcaagccatcacatctgt
cctcgctgtagcggaactggtgtcgttcgcgacaacgaatctctagcactttctgtactt
cgtttaattgaagaggaagcgctaaaagacaacacagcacaagtacttgcagtcgtacct
gtgccaatcgcctcttacttattgaacgaaaaacgtcgttcagtaaaccatatcgaacgc
attcaagaagtgaaaattacggttgttcctaactctgatatggaaacaccgcactttgaa
gttatccgtgttcgtgaaggcgaagagttcgatctgatttcttacttacttcctaagaaa
ctggaagcaatgaaagaagcagaaggtaaagagccagcggaagttgacgtaaaaccaaaa
cgaattgaagagccagttcttaaaggctttgctgctccgtctcaaaccgcacctgcacca
gcagctaaaccagctcctgaggcgaagaagaaagaacaagacgttgaacaagaagagaaa
cctggattgttcagccgtctgtttaaagcacttggtagcttcctattcggtggttctgaa
gaaacaaaagaagaacagaaacctcaggaagagaaaaaaccaaatcgcgataatcgacgt
aacaaacgtgatcgcaacgatcgtcgtcgcaataacaaccagcgtgataatcgtgataac
cgcgacaatcgcgataaccgacgtcgtcgtaagcctcgtgatgagcaggctaatgagcaa
aacgaagctcaacaacaaacaaataaaccgcaaaaccgtaaccaaaagcgtaaacctaaa
gctcaacaggcagataaagcccaagagcagaaagcaaacgcaaaagtagcggaaaaaggt
ctgcagctagcagcggaagctcgtactgaaacaaaaccagaagagagcaaaccgaagcag
caaaatgcgaaagcagaaaaagtgaaagagcgccgccaacgtcgcaaattgaacaagtct
gtacgcgttaaggaccaagaagctattgagaagaaagccgaagaaacagcggttaagact
caagaaacggttgaagctaaagttgaaaagccaacagaagcagcggtagaggcacagcaa
gacaacaagcaagcagagtctaagcaacgtcgtaatcgtcgttcgccacgtcacctgcgt
gcaagcggccagcgtcgtcgccgtggccgtgatcgccgccctaacccattccgcctacgt
aagggaggtgtcgcttctcctgaaatggctatgggtaaagtaatgccacgttacattccg
aaaccagcacctaagaaggaagagcgagttaaggaagaagctgtagcagcagtacctgca
atccaaggtggctttgcttgtccagaaatggcaatgggtaaagtgattattcgtcgcgag
cagcctgtcgtaacagatgcgccagttgttgaacacaaggttcaagaaaccgttgaagcg
aaagtggaagctccagtagtagaagcacccgttgtggaaacagtaatcacagaaaaagct
gaatcagcagtaatagaaacagcctcggtagagcctatcgttgaaactcctgtaactgaa
catgctgaaccggttgatgccattgtagaaacggcacctgctgaagagcctatcgttgaa
gcagaaaaagagattgcggccgaagcgccagtagataaaccagagcctaaagtcgaagcc
attaaagttgcggctaagctaaacgctagcgcaccgatgacgaaagcacctggccctcaa
gagctacgcgaaatcacggttgcagcagcaccgttcaaaaccgaacgttaccaagctaaa
ggtgctggtagccaagtggctaaaaaccgtgcatcggcagagatgacaaagcctaacttt
aactag
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