Vibrio alginolyticus: N646_1995
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Entry
N646_1995 CDS
T02840
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N646_1995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vag03021
]
N646_1995
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_1995
Enzymes [BR:
vag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N646_1995
Transcription machinery [BR:
vag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N646_1995
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N646_1995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Tipalpha
Motif
Other DBs
NCBI-ProteinID:
AGV17817
UniProt:
A0A2I3CBY3
LinkDB
All DBs
Position
1:complement(2161878..2166080)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPEEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSIKL
HNAKSVLADDGKIVITSRATELTIVDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRESGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSEFLPGEQIEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRSEAQDGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atctttggtccagttaaagactacgaatgtctttgtggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgaactggcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgcgttctgtac
ttcgaaatgtacgtagtaacagagcctggtatgactgatctagaaaaaggtcagatgctt
actgaagaagagtatctagatcgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcggaagctatcaaggacctactaggttctatggatatgcacgctgaagcagaacaa
atgcgtgaagagttagagacaacaaactctgaaactaagcgtaagaaagtaactaagcgt
cttaagctggtagaagcgttcatcgcatcgggtaacaaccctgagtggatgatcctaact
gtacttccagtacttccgccagatctacgtcctctagtacctctagatggcggtcgcttt
gcgacttctgatcttaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccacttgtttgtgcagcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagaagaggctgagaaagcataccgcactaaa
caagctgagcttcacgcacgcgttaaagtacgtattacagaaactgttgtagacgaagat
ggcaacagcactacagaaaccaagatggtagacaccactgttggtcgtgcaatgctatgg
caaatcgtgccagctggtctaccgtacagcatcgttaaccaaaagctaggtaagaagcaa
atctctaacctacttaacgaggcgtaccgtaaactaggtctgaaagacacagtaatcttc
gctgaccaaatcatgtacacaggtttcgcatacgcggcactttctggtgtatctgttggt
atcgacgatatggttgtacctgcagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgcgggcgaacgctacaac
aaagttatcgatatctgggcatcgaccaacgaccgtgttgcgaaagcaatgatggaaaac
ctttcatctgaaacggtagttaaccgtgacggtgaagaggaacagcaagagtcattcaac
agcatctatatgatggcggactcgggcgctcgtggttctgcagcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgaaggtgtc
gacatgatgcctcacatcgagggtggtgatgttaaagttgcactttctgagcttgctctt
ggtcgtgttgttgctgaagacgtactaaaacctggcactgaagacgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtgcgctctgtagtaacgtgtgattctgacttcggttgttgtgcacaatgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggtgttattgctgct
cagtctatcggtgagccaggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttctatcaagcta
cacaacgctaaatctgtattggctgatgacggtaagatcgttatcacttctcgtgcgaca
gagttaactatcgttgatgagtttggtcgtactaaagagaaacacaaactgccttacggt
acgctactaagcaaaggcgatggtgatacagttcaagctggcgaaacagttgcaaactgg
gaagcgcacacactacctatcattactgaggtagcaggtcgcatccagttcgtagatatg
atcgacggtgtaacagtatctcgtcaaactgatgacctaactggtctatcttcaagcgaa
gtaactgacccagcagctcgcccttcagcaggtaaagatatgcgtccagctatcaaactt
gttgacgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggtaaagcgattgtgaacatcgaagatggcgcagcagtaggtgttggtgcaaca
ctagcacgtattcctcagaagtctggcggtaacaaagatatcaccggtggtcttccacga
gttgctgacctatttgaagcacgtaagccgaaagagcctgcaatccttgctgagcacaca
ggtactgtgagctttggtaaagagacgaaaggtaaacgtcgcctagtgatcacacgtgaa
agcggtgaagcttacgaagagatgattcctaagcatcgtcagttgaacgtattcgaaggt
gaaaaagttgaacgtggtgatgtgatcgcagatggtccagagtctccacatgacatccta
cgtctacgtggcgtacacgcggtaacgcagtacattgctaacgaagtacaggaagtttac
cgtctacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcagatgcta
cgtaagtgtactattactcactctggtgactctgagttcctacctggtgaacagattgag
tactcacaagttaagattgctaaccgtaacctagaagctgaaggcaaagagcctgcacgt
ttcgaacgtgaactactaggtattactaaagcatctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgacctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgttctgaagcgcaagatggtccttct
gctgagcaagcaacggataacctagcggcacttctaaacgctggtttctcttctgaagag
taa
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