KEGG   Vibrio alginolyticus: N646_1995
Entry
N646_1995         CDS       T02840                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
vag  Vibrio alginolyticus
Pathway
vag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    N646_1995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vag03021]
    N646_1995
   03400 DNA repair and recombination proteins [BR:vag03400]
    N646_1995
Enzymes [BR:vag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     N646_1995
Transcription machinery [BR:vag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     N646_1995
DNA repair and recombination proteins [BR:vag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      N646_1995
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23 Tipalpha
Other DBs
NCBI-ProteinID: AGV17817
UniProt: A0A2I3CBY3
LinkDB
Position
1:complement(2161878..2166080)
AA seq 1400 aa
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHAEAEQMREELETTNSETKRKKVTKRLKLVEAFIASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINVKGEGMYLSGPEEAEKAYRTK
QAELHARVKVRITETVVDEDGNSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDSMKVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSIKL
HNAKSVLADDGKIVITSRATELTIVDEFGRTKEKHKLPYGTLLSKGDGDTVQAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDPAARPSAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAAVGVGATLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITRESGEAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSEFLPGEQIEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQAKRSEAQDGPS
AEQATDNLAALLNAGFSSEE
NT seq 4203 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctgttctgtgcgcgt
atctttggtccagttaaagactacgaatgtctttgtggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggtgtagaagttacacaaactaaagttcgtcgtgac
cgtatgggccacattgaactggcttcaccagtagctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgcgttctgtac
ttcgaaatgtacgtagtaacagagcctggtatgactgatctagaaaaaggtcagatgctt
actgaagaagagtatctagatcgtctagaagagtggggcgacgagttcactgctaagatg
ggtgcggaagctatcaaggacctactaggttctatggatatgcacgctgaagcagaacaa
atgcgtgaagagttagagacaacaaactctgaaactaagcgtaagaaagtaactaagcgt
cttaagctggtagaagcgttcatcgcatcgggtaacaaccctgagtggatgatcctaact
gtacttccagtacttccgccagatctacgtcctctagtacctctagatggcggtcgcttt
gcgacttctgatcttaacgatctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagctgctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactagataacggtcgtcgtggtcgtgcgatcacaggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgattcagctacacccacttgtttgtgcagcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaactctagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaaagatcaacgtg
aaaggtgaaggcatgtacctttctggcccagaagaggctgagaaagcataccgcactaaa
caagctgagcttcacgcacgcgttaaagtacgtattacagaaactgttgtagacgaagat
ggcaacagcactacagaaaccaagatggtagacaccactgttggtcgtgcaatgctatgg
caaatcgtgccagctggtctaccgtacagcatcgttaaccaaaagctaggtaagaagcaa
atctctaacctacttaacgaggcgtaccgtaaactaggtctgaaagacacagtaatcttc
gctgaccaaatcatgtacacaggtttcgcatacgcggcactttctggtgtatctgttggt
atcgacgatatggttgtacctgcagctaagtacactgaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacagtaccaatcaggtcttgttactgcgggcgaacgctacaac
aaagttatcgatatctgggcatcgaccaacgaccgtgttgcgaaagcaatgatggaaaac
ctttcatctgaaacggtagttaaccgtgacggtgaagaggaacagcaagagtcattcaac
agcatctatatgatggcggactcgggcgctcgtggttctgcagcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcaca
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtaactgaacatgactgtggcactcacgaaggtgtc
gacatgatgcctcacatcgagggtggtgatgttaaagttgcactttctgagcttgctctt
ggtcgtgttgttgctgaagacgtactaaaacctggcactgaagacgttcttattccacgt
aacaccctgatcgatgagaagtggtgtcaaatcatggaagagaactcagtagacagcatg
aaagtgcgctctgtagtaacgtgtgattctgacttcggttgttgtgcacaatgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggtgttattgctgct
cagtctatcggtgagccaggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcggcagagaacagtgttcaagttaagaacaacggttctatcaagcta
cacaacgctaaatctgtattggctgatgacggtaagatcgttatcacttctcgtgcgaca
gagttaactatcgttgatgagtttggtcgtactaaagagaaacacaaactgccttacggt
acgctactaagcaaaggcgatggtgatacagttcaagctggcgaaacagttgcaaactgg
gaagcgcacacactacctatcattactgaggtagcaggtcgcatccagttcgtagatatg
atcgacggtgtaacagtatctcgtcaaactgatgacctaactggtctatcttcaagcgaa
gtaactgacccagcagctcgcccttcagcaggtaaagatatgcgtccagctatcaaactt
gttgacgagcaaggtaacgatgtaatgatccctggtactgatatgccagctcactacttc
ctacctggtaaagcgattgtgaacatcgaagatggcgcagcagtaggtgttggtgcaaca
ctagcacgtattcctcagaagtctggcggtaacaaagatatcaccggtggtcttccacga
gttgctgacctatttgaagcacgtaagccgaaagagcctgcaatccttgctgagcacaca
ggtactgtgagctttggtaaagagacgaaaggtaaacgtcgcctagtgatcacacgtgaa
agcggtgaagcttacgaagagatgattcctaagcatcgtcagttgaacgtattcgaaggt
gaaaaagttgaacgtggtgatgtgatcgcagatggtccagagtctccacatgacatccta
cgtctacgtggcgtacacgcggtaacgcagtacattgctaacgaagtacaggaagtttac
cgtctacaaggcgttaagattaacgataagcacattgaaactatcgttcgtcagatgcta
cgtaagtgtactattactcactctggtgactctgagttcctacctggtgaacagattgag
tactcacaagttaagattgctaaccgtaacctagaagctgaaggcaaagagcctgcacgt
ttcgaacgtgaactactaggtattactaaagcatctctagcgactgagtcgttcatctct
gcggcatcgttccaggagacaactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgacctacgtggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaagctaaacgttctgaagcgcaagatggtccttct
gctgagcaagcaacggataacctagcggcacttctaaacgctggtttctcttctgaagag
taa

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