Vibrio alginolyticus: N646_2102
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Entry
N646_2102 CDS
T02840
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N646_2102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vag03019
]
N646_2102
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_2102
Enzymes [BR:
vag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N646_2102
Messenger RNA biogenesis [BR:
vag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N646_2102
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N646_2102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGV17919
UniProt:
A0A2I3CCH0
LinkDB
All DBs
Position
1:complement(2279307..2281142)
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AA seq
611 aa
AA seq
DB search
MTSTLLAEQSDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLK
LVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPF
MALTATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLVEKHKPVSQIVRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVTLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaccttgttagccgaacaatcagactcgcctgtaacgcctcaacgtgtgttg
gaggatgtgtttggttaccaagagttccgtgatggtcagcagttggtgattgatgccgcg
gtagaaggtcgcgacagcttagttatcctgcctactggtggcggtaagtcgctgtgctat
caaattcctgctttggttcgctctggcattactttggtgatttctccgcttatctcgctg
atgaaggaccaagtagaccagcttaaagccaacggtgtagcggctgagtgcattaactcg
accatgcctcgtgaagagctgctcagcgtgtataaccgcatgcacactggtcatcttaag
ttggtgtacgtctcgccagaacgcgtattgatgcgtgatttcattgagcgcttggaaaac
ttgccgctatcgatgattgctgtcgatgaagcgcattgtatttcccagtggggacacgat
ttccgtccagaatatgccgcgcttggtcaacttaagcagcagttttcccatgtgccattt
atggcgctgacggcgacggcggatgatgcaacgcgccgagatattcttgagcgtctgcaa
ctgaataatccagaggtttacctaggcagcttcgaccgtcctaacattcgctacaactta
gttgagaagcacaagccggtttcgcaaatcgttcgttatctggaaacccaaaagggtaac
tgcggcatcatctattgtggtagccgtaagaaagttgagatggtgaccgagaagctgtgc
aacaaccacattcgtgctgctggttatcacgcaggtatggacgctgatgagcgcgcttac
gttcaagaagctttccaacgtgatgacatccaaattgtagtggcgaccgtggcattcggt
atgggcatcaacaaaccaaacgtgcgttttgtggttcactttgatatcccgcgtaatatc
gagtcctactatcaggaaaccggtcgtgcagggcgtgatggtttgcctgcggaagcgatg
atgttgtatgacccagcggacatcagttggctgcgtcgtatgttggatgagaaagacgat
ggtccacagaagcaggtggaaacccacaaactgaatgcgatgagtgcctttgctgaggcg
caaacctgtcgtcgtcaggtgctattgaattactttggtgagtatcgtgagaagccatgt
ggcaactgtgatatttgcttagatccaccgaaacactttgatgccacggaagaagcgcgt
aaggcgttgtcttgtgtgtaccgagtgaatcagagctttggtatgggctacgtggtagaa
gtgctacgtggcatgcaaaacattcgtgtgcgtgaaaatgggcacgataagatttctacc
tacgcgatagggcgcgatcacagccacgattactgggtgagtatcttccgtcagttaatc
cacaaagggctgttgtttcaaaacatcacgcgtaactcaacgctgcaacttaccgaagaa
gcgcgtccgctgctgcgtggcgatgtgactctagagttagcggttccgcgtttagacacc
gcagcacgtgcggcgaagtcagataaactgaccagtaagaactacgacaaaaagctgttt
gctaagttacgtaagctgcgtaagtcgattgctgatgaagatggtttgccaccatacgtg
gtcttcagtgacgcgactctgattgatatggcggaaattctgccaacgtcttacggcgaa
atgctggcagtcagcggtgttggtcagcgcaaactagagaagtacgccgacccattcctt
gatttgattcaagaacacattactcaccacggataa
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