Vibrio alginolyticus: N646_2377
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Entry
N646_2377 CDS
T02840
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vag
Vibrio alginolyticus
Pathway
vag03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
N646_2377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vag03400
]
N646_2377
Enzymes [BR:
vag01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
N646_2377
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
N646_2377
DNA repair and recombination proteins [BR:
vag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
N646_2377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
DUF3862
Motif
Other DBs
NCBI-ProteinID:
AGV18189
UniProt:
A0A2I3CDM6
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All DBs
Position
1:2570170..2570979
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRMGISPHMVGQTILSFTFRTPKLRWDIPTELKKLEGQVIRAISRRAKYLL
IETNTGTAIVHLGMSGSLRVLDADFPPAKHDHVDLKLSSGKILRYNDPRRFGAWLWCAPG
ESHAVLANMGPEPLTEEFNAEYVAEKAKNKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
IHPSRPAGKLTSQEWRLLVENIKMTLEIAITQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGERLQELKIGQRNTFFCSECQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagttgaagtgagccgtatggggattagcccccacatggttgga
caaacgatcctgtcgtttacttttcgaacgcctaaattgcgctgggatattcctacagag
cttaaaaaattggaagggcaggtgatccgtgcgattagccgtcgtgcgaaatacttactg
atcgagacaaacacaggtacagccattgttcacttgggcatgtctgggtctttacgtgtc
ctagatgctgactttccgccagcaaagcacgatcatgtggatctcaaactaagcagtgga
aaaatactgcgttataacgatccgcgtcgttttggggcatggctgtggtgtgctcctggc
gagtcacatgctgtgctagcaaacatggggcctgagcctttaactgaagagttcaatgcg
gaatatgtagcggagaaagctaaaaataagcgtgtcgccgtcaagcagttcatcatggac
aacaaagtcgtggttggtgttgggaacatctacgcgaatgagtcgttgtttaaatctcga
attcacccttcaaggcccgcaggtaagttgacttctcaagagtggaggttacttgttgaa
aatatcaaaatgacacttgagattgccattacgcaaggtgggactactctgaaagatttt
gcgcaagccgatggaaagccgggttactttgcacaagagttattggtttacggaaaagca
ggagagccatgcccagagtgcggcgaacgacttcaagagctaaagattggccaacgtaat
accttcttttgtagtgagtgtcagaagtaa
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