Vibrio alginolyticus: N646_2667
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Entry
N646_2667 CDS
T02840
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vag
Vibrio alginolyticus
Pathway
vag05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vag00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
N646_2667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vag03000
]
N646_2667
Transcription factors [BR:
vag03000
]
Prokaryotic type
Helix-turn-helix
Other families
N646_2667
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
AAA_5
HTH_29
HTH_7
HTH_22
HTH_50
HTH_Tnp_1_2
HTH_17
AAA
MCM
TIP49
HTH_IclR
HTH_30
DUF134
TrmB
HTH_23
RWP-RK
LacI
Motif
Other DBs
NCBI-ProteinID:
AGV18479
UniProt:
A0A2I3CEU9
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All DBs
Position
1:2883734..2885068
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AA seq
444 aa
AA seq
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MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANTLLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGTDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGSSLDMGLIGESIPMKRLRDQVKRIGPTDVSILISGESGTGK
EAVARAIHKVSSRSHKPFMAINCRALNEQRFQAEVFGINADEDMEACLLEQADGGTVLFN
DILTISKEQQMNLLRFLQEGTIDTKDGVKAVNVRILAANSSDVEKALIDGDFNEELYHYI
NVLRINVPSLKERASDIALLARFYLQEFSKEYNSQAKSFSEDAFKALTRYFWPGNVRELM
NQVKRAVLMSDSVMIEEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISEQAM
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccatcccgggatcgcttgtggtagttggcggtact
tatgagccttggttatcggtactggagcaagtgggctggaagtgtcaccaagtaggtgac
ttacgcaaagctaatacgctgttagaagatattggtccatgtatcggtattgttgatctc
agccatgacgagttcagcttgaatggtttggcgaacttagtcagctctcacaaacacgta
cgttggttagcgtttattcgtgaatctcagcttggcactgacaccatatgccagttcatt
gttaacttttgtatcgattttttcacagcgccgatcccagatgcacagttattaagcaca
ataggtcaccagcttggcatgcttaagttggagaaaaaagtttggcctagttttggtagc
agtttagatatgggtttgatcggtgaatctatcccgatgaaacgtttacgcgatcaagtg
aagcgcattggtccaacggacgtcagtattctgatttctggggaaagtgggactggtaaa
gaggcggttgctagggccatccataaagtctcttcacgctctcataaaccgtttatggca
attaactgtcgcgcactcaatgaacaacgtttccaagctgaagtatttggtattaacgcc
gatgaagatatggaagcatgcctgcttgaacaagcagatggcggcaccgtgttgtttaac
gacattcttaccatttcaaaagagcagcaaatgaatctgctgagattcttgcaagaaggc
accattgataccaaagatggcgtaaaagcggttaacgtgcgtattcttgctgctaactcg
tcagatgttgaaaaagctttgattgacggtgacttcaatgaagagctttaccattacatc
aacgttttgcgcatcaatgtccctagcttgaaagaacgtgcgagtgacatcgcattgctg
gctcgtttctacttacaagagttctcaaaagagtacaactcgcaagcaaaaagcttttct
gaggatgcattcaaggcactgacacgttatttctggcctggaaatgtgcgtgagctgatg
aaccaagtgaagcgagcggtattaatgtccgacagcgtaatgattgaagagcatcactta
gatttacctcaacgtaatgactcaaagcgcagcttgaaatcaatccgtgagaagagtgaa
cgtgatgcgttgctagttgttttggaatctcattctggtcaagtttcaaatgcggcgaaa
gagctaggagtttcgcgtgcaaccatgtatcgactacttaataaacataatttgatttcc
gaacaagccatgtag
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