Vagococcus coleopterorum: G7081_00320
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Entry
G7081_00320 CDS
T06513
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vah
Vagococcus coleopterorum
Brite
KEGG Orthology (KO) [BR:
vah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vah03009
]
G7081_00320 (rlmD)
Enzymes [BR:
vah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G7081_00320 (rlmD)
Ribosome biogenesis [BR:
vah03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G7081_00320 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
UPF0020
PrmA
Methyltransf_11
Methyltr_RsmB-F
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QIL45639
UniProt:
A0A6G8AL00
LinkDB
All DBs
Position
61615..63003
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AA seq
462 aa
AA seq
DB search
MEIKHKIKKGQTITLPIKRLGINGEGIGYFKKTIVFVPGALPTETVTAKVTEIAPRFVEA
ELVKINTLAKDRIEPPCDVYDECGGCQLQHLAYDSQLAFKTDVVKQAMAKYKPENFESYS
YKPTIGMENPWRYRNKLQFQIRKNKADKVQAGLYKADSHDLIAIDDCLVQQPATMTVLNT
IVSLLEEYGVPIYDEKNNSGIVKTIMVREGLATGEVQVVFITNSPKLPKKQALIAAIQEQ
LPQVVSVMQNIQNKKTSLVMGDETVHLWGKESIEEHLEDLVFDLSARAFFQLNPEQTALL
YREARKALNPQPNQKIIDAYCGVGTIGLSVAKNVKEVRGMDTIPAAIDDAKLNAERLGLK
NTRYEVGTAEELLPSWLRSGFKPDGIVVDPPRTGLDHDLINALITYPTETLVYVSCNPST
LARDLVKLSQRYQVEYLQSVDMFPQTARAEVVAKLVLKRKGS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaacataagataaaaaaaggccaaaccattaccctaccaatcaaacgctta
ggaattaacggtgaaggaattggctatttcaaaaagacaattgtctttgtcccaggtgct
ttgccaactgaaacagtgactgcaaaagtaactgagattgctccacgttttgtagaagcg
gaactagttaaaatcaacaccttagccaaagaccggattgaaccgccttgtgatgtttat
gacgaatgtggtggctgccaattacaacacttagcttacgactcacaactcgctttcaaa
acagacgtagtcaaacaagctatggcgaaatataaacctgagaactttgaaagttattct
tacaagccaactatcggcatggaaaatccttggcgttacagaaataaattacaattccaa
attagaaaaaataaagctgataaagttcaagctggtttatacaaagcggactcacacgac
ctcattgctattgatgactgccttgtccaacagcctgcaactatgactgtcttgaataca
attgttagtcttttagaagaatatggcgtaccaatctatgacgagaaaaataatagcgga
attgttaaaaccattatggttcgcgaaggattagcgactggtgaagtccaagtcgtcttc
atcactaacagtcccaagttacctaaaaaacaagccctaattgcagcaattcaagaacag
cttccacaagttgtttctgttatgcaaaatattcaaaataaaaaaacatcacttgtgatg
ggtgatgaaactgttcacctatggggaaaagaaagtatcgaggaacaccttgaagattta
gtcttcgacttatctgctcgtgcctttttccagttaaacccagaacaaacagcgctttta
taccgtgaagctcgtaaagctttaaacccacaacctaaccaaaaaattattgatgcttat
tgtggcgttggtacaatcggtttaagtgttgctaagaatgttaaagaagttcgtggaatg
gataccattcctgcagccattgatgatgcaaaattaaacgctgaacgtcttggcttaaaa
aatactcgttacgaagtaggcacagctgaagagttattacctagttggttacgctctggg
ttcaaacctgatggcattgtggtggatcctccacgtaccggcttagaccatgacttaatc
aatgccttaatcacttacccaacggaaacgcttgtttatgtttcttgtaacccttcaact
ttggcacgtgacttagtcaagctaagccaacgctatcaagttgaatacctccaatcagtt
gatatgttcccacagactgctcgcgcagaagttgtggctaaattagtcttaaaaagaaaa
ggaagctag
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