Candidatus Velamenicoccus archaeovorus: BU251_03485
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Entry
BU251_03485 CDS
T05804
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vai
Candidatus Velamenicoccus archaeovorus
Pathway
vai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BU251_03485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vai03019
]
BU251_03485
Enzymes [BR:
vai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BU251_03485
Messenger RNA biogenesis [BR:
vai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BU251_03485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QAT16860
UniProt:
A0A410P411
LinkDB
All DBs
Position
complement(800579..801841)
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AA seq
420 aa
AA seq
DB search
MTNHSTTNKTPQEPAASPDSFYGLGIAPGILDILKRIHFITPTPIQRKAIPLAMEGKDVV
GIAQTGTGKTHSFAIPMIQRLSQTKGMGLILAPTRELAIQIDEAFGVLAHPFNMRTACLI
GGAPMEPQTVALHKNPRIVIATPGRLLDHMRQWHIILDDVTMLVLDEADRMLDMGFAPQI
NMILKYIPKQRQTMLFSATMPKEIMEMATHHMKLPVSVEIAVSGTVAERVTQELFIVKKE
TKMKLLDKLLRQYRGSVLLFSRTKHYAHKITQSIRGMGHRAAEIHSDRSLNQRREALEGF
KSGRYRILVATDIAARGIDVSGIEVVVNYDLPEDAENYVHRIGRTARAGQKGHAISFATP
DQSRDVRDIEKLIRATLPVSRHPEIPSEEFTQESQAARHKPQGKPSGHHHHAGRRFSHHR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcattcaacgacaaacaaaaccccccaggagcctgctgcgtcccctgatagt
ttttatggactgggcatcgccccgggcatcctcgatatcctcaaacgcatccatttcatt
acccccacgcctatccagcgaaaggcgatccctttagctatggaaggtaaggatgtcgtc
gggatcgcgcagacgggaacaggcaaaacccattctttcgctattcccatgatccagcgc
ctcagtcagacaaaaggcatgggcctgatcctggcgcctacccgtgaactcgcgatccag
atcgatgaagccttcggcgtccttgcgcaccccttcaacatgagaacagcctgtctgatc
ggaggcgcgcccatggaaccccaaacggtagccctgcataaaaacccgcgcatcgtcatc
gcgacaccaggcagacttctcgaccacatgaggcaatggcacatcatcctcgacgatgtc
accatgctcgtcctcgacgaagccgaccgcatgctggacatgggttttgctccccagatc
aacatgatcctgaaatacatccccaaacagaggcagaccatgctcttctccgccaccatg
cccaaagagatcatggaaatggcgacgcatcacatgaaactgcccgtgagcgtcgagatc
gccgtctccgggaccgtcgccgagcgtgtcacgcaggaattattcatcgtcaaaaaagaa
accaagatgaagcttctggacaagctgttgaggcaataccgtggttcggtcctgttattc
tcccgcaccaaacattatgcgcacaagatcacacaatccatccgcgggatggggcaccgc
gcagccgagatccattctgaccgttccctcaaccaacgacgcgaagccctggaaggcttc
aaatccggaagatacaggatcttggtagcaacggatattgccgccaggggcatcgatgtt
tcggggatcgaggtggtcgtcaattacgacctgcccgaagacgcggaaaactatgtccac
cgcatcggccgcacagccagggccggacaaaaagggcatgccatctcctttgccacgccc
gaccagagccgggacgtgcgggatatcgaaaaactgatacgggcaacgctgcctgtttca
cggcatccggagatcccctcggaagagtttacccaggagtcacaggcggccagacacaaa
ccccagggcaaaccatccggacaccatcatcatgccggcagacggttttcccatcaccgc
tga
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