Verticillium alfalfae: VDBG_00052
Help
Entry
VDBG_00052 CDS
T02227
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
val
Verticillium alfalfae
Pathway
val03030
DNA replication
val03410
Base excision repair
val03420
Nucleotide excision repair
val03430
Mismatch repair
val03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VDBG_00052
03410 Base excision repair
VDBG_00052
03420 Nucleotide excision repair
VDBG_00052
03430 Mismatch repair
VDBG_00052
03440 Homologous recombination
VDBG_00052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
val03032
]
VDBG_00052
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_00052
Enzymes [BR:
val01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VDBG_00052
DNA replication proteins [BR:
val03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
VDBG_00052
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
VDBG_00052
MMR (mismatch excision repair)
DNA polymerase delta complex
VDBG_00052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
RNase_H_2
divDNApol
DNA_pol_B_exo2
DUF2614
DUF1948
Motif
Other DBs
NCBI-GeneID:
9528475
NCBI-ProteinID:
XP_003008371
UniProt:
C9S8I4
LinkDB
All DBs
AA seq
1055 aa
AA seq
DB search
MATSVLPQKRVLGETSNARRNIPSSPGSKKRKNNSEKDQAWERPLLDDFNPDKTTIVFQQ
IEAEEGTLHGGRATVKLFGVTEAGHSVMLHVTDFKHYLYIAAPVSFQPEDCNNFRAYLET
QVAQHQPVIHSVALLMRENIYGFQGNVKNPYLKITVNDPKHIGKVRSTIEAGNANWKGLW
KGVDGGVMTFDNIQYVLRFMVDCKLQGMSWVEAPAKSYKLMSSSLRQSNCQIEAEISYLD
LVAHKPEGEWSKMAPLRILSFDIECAGRKGIFPEANHDPVIQIANVVTRYGEKKPFIRNV
FCLDTTSSIVATQVLEFDKEEKMLKEWQKFLQSVDPDLIIGYNIANFDFPYLLDRAKHLK
VAGFEYWSRIPSMPSRAKETSFSSKQIGNRDSKSTNTNGRLQLDLLQLVQRDHHLRSYTL
NSVCSQFLGEQKEDVHHTMITELFNGTPESRRRLALYCLKDAYLPQRLMDKLSCLENYTE
MARVTGAPFNMLLARGQQVRFISQLFRKALEQKLVIPNMKSEASDEQYEGATVIEPTRGY
YDVPIATLDFASLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIVTPAGNTFVTAKQR
KGLLAQILEELLAARKQAKRELAVATDPFKKAVLNGRQLALKVSANSVYGLTGATTGKLP
CLEIASSTTSFGRQMIEKTKEEVEAKYTIANGYSHDAQVIYGDTDSVMVKFGTKDLAEAM
KLGEEAAGFVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWTKPEKYDKMDTKGIETVR
RDNCLLVQTVIEKVLRMILIDQDVQGAQEYVKDMIADLLQNKVDMSKLVITKALTKDDYS
AKQAHVELAQRMKKRDAGSAPGLGDRVAYVMIKGAAGAKNYEKSEDPIFVLENNVPIDTR
YYLDNQLAKPLGRIFEPILGETKANSLLTGAHTRTIAVAAPMVGGLMKFAKKTQTCMGCK
KPLTSKQEAEGAVCSDCAPRVGELYKKTLDRVSDLEVRFGRLWTQCQRCQGSIHCEVICS
SKDCPIFYMRMKAKKDLEDAGKELKRFDFDQAAIW
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgtctgtactgccccaaaaacgtgtgctcggggagacgtcgaacgcccgccgc
aacatcccctcgtccccaggctccaagaagcgcaagaacaacagtgagaaggaccaagca
tgggagcgaccgcttctcgacgacttcaaccccgacaagaccaccattgtctttcaacag
atcgaggctgaggagggtacattgcatggcggccgtgccaccgtcaagctgtttggcgtc
accgaggctggtcactcggtcatgctgcacgttaccgacttcaagcactatctctacatc
gccgcccccgtctccttccagcctgaggactgcaacaactttagggcgtatctggagacg
caggtcgctcagcaccagcccgttattcattccgtggccctactcatgcgcgaaaacatc
tatggcttccagggcaatgtcaaaaacccatatctcaagatcacagtgaacgatcccaag
cacatcggcaaagtgcggtctactatcgaggccggcaatgccaactggaagggcctctgg
aagggcgttgacggtggcgtgatgacgtttgacaatattcaatatgtcctgcgcttcatg
gtggactgcaagctgcaaggcatgtcctgggtcgaagcaccggcgaaatcctacaaattg
atgtccagctcgctacgacagtccaactgccagatcgaggccgaaatcagctaccttgac
cttgtcgcacacaagccggaaggcgagtggtcaaagatggcgccgctccgcatcttgtcc
tttgatattgagtgtgccggtcgcaagggcatcttcccagaggcgaaccacgaccccgtc
atccagatcgcaaacgttgtcacaagatacggagagaagaagccgttcattcgcaatgtg
ttctgtctggacacgacgagctccatcgttgcgacacaagttctcgagtttgataaggaa
gaaaagatgctgaaggaatggcagaagtttctacagagcgtcgaccccgatctcatcatc
ggatacaacattgccaactttgatttcccgtatctgctcgaccgcgcgaaacatctcaag
gtggcaggcttcgagtactggtcccgtattcccagtatgccctcgagagccaaagaaacg
agtttctccagcaagcagatcggcaaccgcgactcgaagagcaccaacaccaacggcagg
ttgcagctcgatctcctgcaactagtgcagcgtgaccatcacctgcgaagttatacgctc
aattcggtgtgctcccaattcttgggcgagcagaaggaggacgtccaccatacaatgatt
acagaactcttcaacggtacccctgaatcccgacgtcgattggcgctgtactgtctgaag
gacgcctacttgccgcaacgcctcatggacaagctctcttgcctcgaaaactacacagaa
atggcaagagtcacaggcgctccgttcaacatgctactcgcccgaggccagcaggtgagg
ttcatcagtcagcttttccgcaaggcgctggagcagaagctggtgattcccaatatgaag
tccgaggctagcgacgaacagtacgaaggtgcaacggtcattgagccgacaagaggctac
tacgatgttcccattgcaacgctcgatttcgcatctctgtaccccagtatcatgcaggcg
cacaacctttgttatacgaccattgtggataagaaagccatcgagaaacttggcctcaag
aaggacgaagattacatcgtcactcccgccggcaacacctttgtgacagctaagcaacga
aagggtctcctcgcacaaattctcgaggagctgctggctgcccgaaaacaggccaagcgc
gagctcgcagtcgcaactgatccgttcaagaaggctgtgctgaacggaagacagctggct
ttgaaggttagcgccaactcggtgtatggtctcacgggtgccacaacgggcaaacttccg
tgtctggaaatcgccagtagtaccacaagttttggtcggcagatgattgaaaagacaaag
gaggaggtggaggccaagtacaccatcgccaacgggtattcgcacgacgcgcaggtcatc
tacggtgacacggattccgtcatggtcaagtttggcaccaaggacctggcggaagcaatg
aagctgggcgaggaagctgccggcttcgtgtcctccaagttcgtcaagccgatcaagctc
gagttcgaaaaggtctacttcccgtacctgctcatcaacaagaagcgctatgctggtctc
tactggaccaagccggagaagtacgacaagatggacacgaagggtatcgagacggttcgt
cgagacaactgcttgttggtccagacggtcattgaaaaggtcttgcgcatgattctcatc
gaccaggacgtacaaggcgcgcaagaatatgtcaaagacatgatcgccgacctgctacag
aacaaggtggacatgtcaaagcttgtcatcaccaaggcgctgacaaaggacgactactcg
gccaagcaggcacacgtggaactcgcccaacgaatgaagaagcgcgacgcaggttcggct
cccggactgggtgaccgtgtggcgtacgtcatgatcaagggcgcagcgggagcgaagaac
tatgagaagtcggaggaccccatcttcgtgctggagaacaacgtgccgatcgatacgagg
tactacctggacaaccagctggcgaagccactgggtcgcatcttcgagccgattctcgga
gagaccaaggccaactcgctcctgacgggcgcgcacacgcgaacgattgccgtggcggcg
cccatggtcggaggtctcatgaagtttgctaagaagacgcagacgtgcatgggctgcaag
aaaccgctgacgagcaagcaagaggcagagggcgctgtgtgctcagactgcgcgccgcgt
gtgggagagctgtacaagaagacgctggaccgtgtgtctgacctcgaggtgcgctttggg
cggctctggacgcagtgtcagcggtgccagggcagcatccactgcgaggtcatctgcagc
agcaaggactgtccgattttctacatgcgaatgaaggcgaagaaggatctggaggatgcg
ggcaaggagctcaagcgtttcgatttcgaccaggcggccatctggtaa
DBGET
integrated database retrieval system
