Verticillium alfalfae: VDBG_00114
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Entry
VDBG_00114 CDS
T02227
Name
(RefSeq) COPII coat assembly protein SEC16
KO
K20353
COPII coat assembly protein SEC16
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
val04131
]
VDBG_00114
Membrane trafficking [BR:
val04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
VDBG_00114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
9528538
NCBI-ProteinID:
XP_003008433
UniProt:
C9S8T0
LinkDB
All DBs
AA seq
1654 aa
AA seq
DB search
MSSDEHVSSWHPALMPNSSASATVDGHPSAPAHIQPPPVQDSLEGSEPYAHHTTTSSADS
PAQPEATADLDASLINEPTELTSTSEATMPPVPDPIPQDESAIPTAWFAEEPPPEVQAAG
PVLGHSSTVSFARTVSHDINFHDDEDADWNLSRTDTDPFKFMPPSDRTNSFPVVPPASPP
GASAGTQPLPATEAQHVIQATEQHQDDLDAPLSERAISPAHPHFADDPSDTPHINGYSEQ
ARYVGRDMTDADEDDVGSRFEEGLPLIPRAPEHTETAASASFFDHEASADDDFFSHVQDA
GHDDTPPTLERKSTMQVLGAFGTNPLSRADTLEGMAEEDEHQATPSQALATEDDSSKPAP
EDLAAKWQEAFAGDDDDEFLLDDNAGDSKPVDPAAFFGSDDEGFLDDDDDDETTASAPAV
QPPSLPAAQQQSLQGRYTPQSPSFPFPKAAATPSPYVPVAAAPPQTPTSAYAPSPVVTSF
PAPTSYAAQSQPSPIQAAYGMPPPPRPEASKAQSFADKNKGGYTSPYDLPMDVKPRKRAS
MQQLPRAQHGQHGQQDRRISAQFEPRVNRVSSLPPTQEVEEDEGAKAEQSPQPVDAYAPL
GATPASPPLARHTPPPSAHGYGPSMLSPPKRAAANYTPQPQSNPLSPEQRFAPPMRSQTQ
SPGSLQSRYQPSEAAARPASSHGAAAPQAAQPASAQHSYAAAPRTGRHRAPSQSLNMVAP
TDGRENDPLKRWKGAPVFSWGIGGTIITSFPKEIPRYGMGQTAPMIVRTPGEVRVKQVKD
IEPLEDRLAKFPGPLKGKSKKKETISWLTAGIESLEANLPGQTYSSQITHEDKRTTERVL
LWKILRTFIEFDGALEGGAEVEAAVRDILSPEAKDEAAEAAPLYADGAAGVAFPATSTQM
QADGVDSQTVVSIRKHLLAGDREQAVWAAVDKRLWGHAMLISNTVSPDLYKQVAQEFVRK
EVNYPGRNNESIAALYKVLSGNFDECVDELVPSHARAGRQLMTTAATAEPAKDALDGLDK
WRETLGLVLSNRSPDDTKALSALGDLLSTYGRAEAAHICFLFARKTIVFGGLDDQTASFV
LLGADHKTQAEQFGKETEALLLSEVFEYGLSLANGANSAGVPHLAAYKLQHAATLAEHGF
RDKALQYCDVIANSITAQTKRSPYHHALLEAAVDDLSKRLKQAPKGESSSWISKPSMNKV
SDSMWNRFNKFVAGDEADGSGTATPGEPGAETGPFGRIAGGTPTISPSPSVSNFDVYGNN
NPGYPVTAPAALAQGTRAASRYAPMGAQPSTPTTSYEPTSGYTPAAQSTQPSNDYGRASF
DAPTRTSIDSQSGVTAGSYTPQAYNPAPYGAPLDGHAPQPDPAPSAYGPYGGLQEAPVIT
HQGSPAPPADAPTQFTPQGDQGYQPPSYGYEPSSFVTNAGPDSQQAEPEDAAASGGYEAP
SYQPYSYEPPTYDPGVEPSNDDNDDDDKPKPKKKSFMDDDEDDIPALRPQGKSKSEKDKE
NDEMFRKAAEEDGKIQPRHAPFLCHNEANSSTAKRAGEQSAGKKGWGFGSWWGGKKDAMP
DSNPGNKPIRAKLGESSSFVYDPESESDGVKKAGAEQTRPGRADTLPPSTAQGQVDRTPP
LVVVGRHGTPWRTPSAAYADRRRQPVKGSFAGEP
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgagctccgacgaacacgtttcgtcatggcatcccgctctgatgcctaacagcagtgct
tctgccactgtcgacggccatccctccgctcctgcacacatccaaccaccaccggtccaa
gattctttggagggatccgaaccatacgcgcaccacacaaccacatcatctgcagactca
cccgcgcaacccgaggccaccgccgatcttgatgcgtcgctgatcaacgagccaaccgaa
ctcacgtccacttccgaagctaccatgcctccggtccctgacccgataccccaggacgag
agcgccataccaacagcctggttcgcagaggaaccaccacctgaggtgcaagccgccggc
cctgttctcggccactcgagcactgtttccttcgcccgaactgtgtcgcatgacatcaac
ttccacgatgacgaggatgccgactggaacctctcccgaaccgacacggaccccttcaag
ttcatgcctccctctgacaggaccaactcgttcccggtcgtccccccagcgagcccgccc
ggcgcgtcggcagggactcaaccgcttcccgcgaccgaggcccaacatgtaattcaggcg
acggagcagcaccaggacgaccttgacgctcctctgtctgaacgagcaatctctccagcc
caccctcactttgccgacgacccgtctgacacgcctcatatcaacggttactcggagcaa
gcgcggtatgtaggacgcgacatgacggacgccgatgaggacgatgtcggttcgcgattc
gaggaaggcctgcctctcattcctcgcgcgcccgagcacacggagactgccgcctcagcc
tccttcttcgaccacgaagcctcggccgacgacgactttttcagccatgtgcaggatgct
ggccacgatgatacgccgcccacgctggagcgcaagtcaacgatgcaggtactcggtgcc
tttggcacgaacccactgtcgcgagcggatacgctggaagggatggccgaggaggatgag
catcaagcgacgccgtcgcaggctttggctacagaggacgactccagcaagcccgctcct
gaggatctggccgccaaatggcaagaggcattcgccggagacgacgatgatgaattcctg
ctcgacgacaacgctggcgactcgaagccagttgatcccgccgcattctttggcagtgat
gacgaaggtttcttggacgacgacgacgacgacgagaccacggcatccgcgccggctgtg
cagccacccagtctgccagccgctcaacagcaaagcctgcaaggacgatatacgccgcag
agcccatctttcccgtttcccaaggctgccgccaccccgtcgccttacgttcctgtggcg
gcggcgccgccccagacgcctacatcagcatatgcgccttcgcctgtggtcacttcattc
ccagccccaacgtcgtacgctgctcagtcccagccctcgcccatccaagctgcatatggc
atgccgccgcccccgcgtcccgaggcatccaaagcccagagcttcgccgacaagaacaag
ggcggctacacctcgccctacgacttgcccatggatgtcaagccgcgcaagcgagccagt
atgcaacagctgccgagagctcagcacggccagcacggccagcaggatcgacgcatcagc
gcacagtttgagccgagggtcaaccgcgtttcgtcgctgccgccgacgcaggaggttgag
gaagacgaaggtgcgaaggccgaacagtcgcctcagcctgttgatgcgtatgcccctctt
ggcgcgacgcctgcatcgccacctcttgcacgccacaccccaccgccgtccgcccatggg
tatggcccatccatgttgtcgccccccaagagagctgcggccaactacacgcctcagccg
caatcgaaccccctgtcacccgagcagaggttcgcgcccccgatgaggtcgcagacacaa
tcgcctggctcactccaaagccgctaccaacccagtgaagctgctgcacgtccggcatcc
tcgcatggtgccgctgctccgcaagcagcgcagcccgccagtgctcagcactcatatgcc
gcagcacctcgcacgggtcgccaccgagctccttctcagagcttgaacatggtcgcccct
accgatggacgtgaaaatgacccactcaagaggtggaagggagcacctgtcttctcgtgg
ggtatcggtggcaccatcatcacatctttccccaaggagatcccacgctacggcatgggc
caaacggcacccatgattgtgcgtacgcccggcgaagtgcgcgtcaagcaggtgaaagac
attgagcctctcgaagaccggctggccaaattccctggacctctcaaggggaagtcgaag
aagaaggagactatttcctggctgactgccgggatcgagtcactggaggcaaacttgcca
gggcagacgtacagctctcaaatcacccacgaggacaagcgaacgactgagcgcgtcttg
ttgtggaagattctcaggacgttcatcgaattcgatggcgctctcgaaggcggcgcagag
gtcgaggccgccgtgcgcgacattctctcgccagaagcaaaggacgaggcagctgaggca
gctcctctttacgcggatggcgcagctggtgttgcgttcccagccacttccactcagatg
caggcagatggtgttgactcccaaactgtcgtctctatccgcaagcacctcctcgctggt
gatcgggaacaagcggtctgggcagctgtcgacaagaggctctggggtcatgccatgctc
atctcgaacacggtgtcgccggatctgtacaagcaggtcgcccaagagttcgtgcgtaaa
gaggtcaactacccggggcgtaacaacgagtcgattgctgcactttacaaggtcctgtca
ggcaatttcgatgagtgtgtcgatgagctggtccccagccatgctcgtgctggccgccag
ctgatgaccacggccgcgactgccgagccagccaaggacgccctcgatggcctcgacaaa
tggcgcgagaccctagggttggtgctcagcaaccggagccccgatgacaccaaggcgctg
agcgcactgggcgatctcttgtcgacatatggcagagctgaagccgcacacatttgcttc
ctctttgcccgcaagacgatagtattcgggggtctcgacgatcaaacagccagctttgtc
ctcctgggcgctgaccacaagactcaagccgagcagttcggcaaggaaacagaggcactg
ctgcttagcgaggtgttcgagtatggcctttcgcttgcgaacggggccaactcggccggc
gtgccgcacctcgctgcctataaactccagcatgccgcaactctggcggagcatggcttt
agggacaaggcgctgcaatactgcgatgtcattgccaactcgatcactgcacagacaaag
aggtctccgtaccaccatgccctgctcgaggctgcggtagatgacctgtccaagaggctc
aagcaggcgccgaagggcgaatcttcgtcctggatctccaaacccagcatgaacaaggtc
tcggatagcatgtggaaccgcttcaacaagtttgttgccggcgacgaggccgacggttct
ggcaccgccacgccaggcgagcccggcgcggagactgggccatttggccgcattgccgga
ggcacacctaccatcagcccgtctccttccgtatcgaactttgacgtgtacgggaacaac
aatcccggctacccagtcactgctcctgcagcacttgcacaggggacgagggcagcatcg
cgctacgcacccatgggagcgcagccgtctacaccgacgacttcgtatgagccgacgtcg
ggttatacgcctgcggcgcagtcgactcagccgtcgaacgactacggccgtgcgtccttt
gatgcgccgactcgcacctctatcgactcgcagtctggtgttaccgcaggcagctatact
ccgcaagcctacaaccctgcaccctacggtgcgcctctggacggccatgcaccccagcct
gaccccgctccgtctgcctatggaccgtacggcggcttgcaagaagctccggtcatcaca
caccagggatcgccagcgcctcctgccgatgcgcccacccaattcactcctcagggggat
caaggctaccagccgccctcgtacggctatgaaccttcgtcttttgtcacgaacgcaggc
ccggattcccaacaggccgagcccgaggatgctgcagctagcggagggtacgaagcacct
tcgtaccagccctacagctacgagccaccgacctatgacccgggcgttgagccatccaac
gacgacaatgacgatgatgacaagccaaagccaaagaagaaaagcttcatggatgacgac
gaggatgatattcccgcgctgcggccgcaggggaaatccaagtcggagaaggacaaggag
aatgacgagatgttcagaaaggccgccgaagaagatggtaagattcaacctaggcatgcc
ccttttctttgtcacaacgaagctaatagcagtacagccaagagagcaggtgaacagagc
gcaggcaagaagggatggggcttcggcagttggtggggtggcaagaaggacgccatgccg
gattccaacccaggcaacaagccgatccgtgccaagttgggcgagtcgagcagcttcgtc
tacgaccccgaatcagaaagcgatggggtcaagaaggccggggccgagcagacacggccg
ggccgagcagacacgttaccaccctccaccgcccaaggccaagtcgaccgcacgcccccc
ctcgtcgtcgtcgggcgccatgggaccccctggcggaccccctcggccgcctatgccgat
cggcgcaggcagcctgtcaaaggctccttcgcgggagagccttga
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