Verticillium alfalfae: VDBG_00262
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Entry
VDBG_00262 CDS
T02227
Name
(RefSeq) exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_00262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_00262
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VDBG_00262
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
VDBG_00262
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
9528770
NCBI-ProteinID:
XP_003008581
UniProt:
C9S555
LinkDB
All DBs
AA seq
353 aa
AA seq
DB search
MPITIHAPKPTPQVHTNTVYASDSDSDDGGVDLDGDLSMSRPAKRARNAGHHDIVTPGEV
ITDDPQWMRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDLVVGRIVE
VQPKRWRVDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVAEVQTLHA
EGGASLHTRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQIEVTLGV
NGYIWISKLVKADGESAAGAGEVVGLNRMEDTVSANVYSSQNDRIDTETMREISRIRSVI
MALVENGLRVDEETVSTGYQIAVDMGHESAEDDIYLGGERGQRLAAAMIASEA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcacaatccatgcgccgaaacccacgccgcaggtgcacaccaacacagtctat
gcatccgactcagactcagacgacggcggcgtcgatctcgatggcgacctcagcatgagc
cgccccgccaagcgcgcccgcaatgctggccaccatgatatcgtcacgcccggcgaggtc
atcaccgacgacccccagtggatgcgaggccacggcacgtacgtcagcgcggccgacggc
tccatcgtctcgtccgtcgccggcaccatcacccgcaccaacaagctgctgtcagtgcgg
ccgctgcgcgcccggtacacgcccgagattggcgacctcgtcgtcgggcgcatcgtcgag
gtgcagccgaagcggtggcgcgtcgacgtcggcgcctcgcagctcgcgacgctgcaaatc
tccgccatcaacctccccggcggcatcctgcgcaagcgcaccgacacggacgagctgcag
atccgctccttcttcgccgagggcgacctgctcgtcgccgaggtccagacgctgcacgcc
gagggcggcgccagcctgcacacgcgctccctgcgctacggcaagctgcgcaacggcctc
ttctgcgccgtcagcggcaccggcggcggcggcgccggtgttgtccgcgccaagaggcag
agcttcgccgtcgacgcctcggcccgcggcgccgaccagatcgaggtcacgctcggcgtc
aacggctacatctggatcagcaagctcgtcaaggccgacggcgagagcgccgccggagcc
ggcgaggtcgtcggcctcaaccgcatggaggacacggtcagcgccaacgtctactcgagc
cagaacgaccgcatcgatacggagacgatgcgcgagatttcgcgcatacgcagtgtcatc
atggccctcgtcgagaacggcctgcgcgtggatgaggagacggtctcgactgggtatcag
attgctgtcgacatgggacacgagagtgctgaggacgacatttacctcggtggcgagagg
gggcagaggctggcggctgccatgatcgcgagcgaggcctga
DBGET
integrated database retrieval system