KEGG   Verticillium alfalfae: VDBG_00262
Entry
VDBG_00262        CDS       T02227                                 
Name
(RefSeq) exosome complex exonuclease RRP4
  KO
K03679  exosome complex component RRP4
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_00262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_00262
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     VDBG_00262
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     VDBG_00262
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 RRP40_S1 ECR1_N_2
Other DBs
NCBI-GeneID: 9528770
NCBI-ProteinID: XP_003008581
UniProt: C9S555
LinkDB
AA seq 353 aa
MPITIHAPKPTPQVHTNTVYASDSDSDDGGVDLDGDLSMSRPAKRARNAGHHDIVTPGEV
ITDDPQWMRGHGTYVSAADGSIVSSVAGTITRTNKLLSVRPLRARYTPEIGDLVVGRIVE
VQPKRWRVDVGASQLATLQISAINLPGGILRKRTDTDELQIRSFFAEGDLLVAEVQTLHA
EGGASLHTRSLRYGKLRNGLFCAVSGTGGGGAGVVRAKRQSFAVDASARGADQIEVTLGV
NGYIWISKLVKADGESAAGAGEVVGLNRMEDTVSANVYSSQNDRIDTETMREISRIRSVI
MALVENGLRVDEETVSTGYQIAVDMGHESAEDDIYLGGERGQRLAAAMIASEA
NT seq 1062 nt   +upstreamnt  +downstreamnt
atgcccatcacaatccatgcgccgaaacccacgccgcaggtgcacaccaacacagtctat
gcatccgactcagactcagacgacggcggcgtcgatctcgatggcgacctcagcatgagc
cgccccgccaagcgcgcccgcaatgctggccaccatgatatcgtcacgcccggcgaggtc
atcaccgacgacccccagtggatgcgaggccacggcacgtacgtcagcgcggccgacggc
tccatcgtctcgtccgtcgccggcaccatcacccgcaccaacaagctgctgtcagtgcgg
ccgctgcgcgcccggtacacgcccgagattggcgacctcgtcgtcgggcgcatcgtcgag
gtgcagccgaagcggtggcgcgtcgacgtcggcgcctcgcagctcgcgacgctgcaaatc
tccgccatcaacctccccggcggcatcctgcgcaagcgcaccgacacggacgagctgcag
atccgctccttcttcgccgagggcgacctgctcgtcgccgaggtccagacgctgcacgcc
gagggcggcgccagcctgcacacgcgctccctgcgctacggcaagctgcgcaacggcctc
ttctgcgccgtcagcggcaccggcggcggcggcgccggtgttgtccgcgccaagaggcag
agcttcgccgtcgacgcctcggcccgcggcgccgaccagatcgaggtcacgctcggcgtc
aacggctacatctggatcagcaagctcgtcaaggccgacggcgagagcgccgccggagcc
ggcgaggtcgtcggcctcaaccgcatggaggacacggtcagcgccaacgtctactcgagc
cagaacgaccgcatcgatacggagacgatgcgcgagatttcgcgcatacgcagtgtcatc
atggccctcgtcgagaacggcctgcgcgtggatgaggagacggtctcgactgggtatcag
attgctgtcgacatgggacacgagagtgctgaggacgacatttacctcggtggcgagagg
gggcagaggctggcggctgccatgatcgcgagcgaggcctga

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