Verticillium alfalfae: VDBG_00401
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Entry
VDBG_00401 CDS
T02227
Name
(RefSeq) pre-mRNA-splicing factor prp1
KO
K12855
pre-mRNA-processing factor 6
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_00401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_00401
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VDBG_00401
Complex C
U5 SnRNP specific factors
VDBG_00401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
TPR_8
HAT_Syf1_CNRKL1_C
TPR_2
Suf
AAA_lid_2
Motif
Other DBs
NCBI-GeneID:
9528912
NCBI-ProteinID:
XP_003008720
UniProt:
C9S5R8
LinkDB
All DBs
AA seq
733 aa
AA seq
DB search
MASRRDFLSQPAPENYIAGIGRGATGFTTRSDLGPAREGPSEDQIKEAVAKRAAQLGIGA
DGKKGDDKDDDKGGDDDRFKDPDNEVGLFAGGLYDKDDEEADRIWQEVDEKMGKRRQKQR
EARELAEKEEYERNNPKISQQFADLKRALGTVTDEEWASLPEVGDLTGKNKRARAALRQR
QYAVPDSVLAAARDASELGTTVSDEGVAPGSDGADCTMTTFTKIGAARDKVLKSRLEQAS
SLGGTDTAAGSATSIDPKGYITSLDKSMMNGAQAQVADINRVRELLTSVTKTNPNSPGGW
IAGARLEELAGKTVAARNVIARGCEKCPKNVDVWLENIRLNDVRNAKIIAAEAIKKNDKS
VLLWVEAMRLENEPRAKKRVIRLALDHIPDSEALWKEAVNLEEDQTDARLLLAKATEIIP
LSVDLWLALARLETPENAQKVLNKARKAVPTSFEIWIAAARLQEQLGASVNVMKRAVNVL
VKEAAMPKREEWIAEAEKCEEEGALWMLKGQIYEDLDKLGQAREAYSTGVKAVPASVPLW
LLYARLEERAGLVVKARSVLDRARLAVPKSPALWRCPRAACCGASRSGTSRRRTQRKPRS
LEAIKKVDNDPILFVAVARLFWGERKLEKAQNWFEKALVLDSNNGDTWAWYYKFLLQHGT
EVSEPPFGLDAGRTPPVHEANNCTQEKRGEVITKCVLVEPRHGEYWQAIAKRPANARKGT
EEILNLVANSLER
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcggcgcgacttcctcagccagccggcgcccgagaactacattgctggcatc
ggccgtggcgcgacaggcttcacgacacgatcagatctgggcccggcacgcgagggaccc
agtgaggaccagattaaggaggccgtcgccaagcgtgcagcgcagctcggcatcggcgcc
gacggcaaaaagggcgacgacaaggacgacgacaagggcggcgacgacgaccggttcaag
gaccccgacaacgaggtcggcctcttcgccggcgggctctacgacaaggacgatgaggag
gccgacaggatatggcaggaggtcgacgagaagatgggcaagcggcggcagaagcagcgc
gaggcccgcgagctggccgagaaggaggagtacgagcgcaacaacccgaaaatctcccag
cagtttgccgacctcaagcgcgccctcggcaccgtcaccgacgaggagtgggcgagcctg
cccgaggtcggcgacctcacgggcaagaacaagcgcgcgcgcgccgccctgcgccagcgc
cagtacgccgtccccgacagcgtgctggcggcggcgcgcgacgcctccgagctcggcacc
accgtgtccgacgagggcgtcgccccgggctccgacggcgccgactgcaccatgaccact
ttcaccaagattggcgccgcccgcgacaaggtgctcaagtcgcgcctcgagcaggcgtcg
tccctcggcggcaccgacacggccgccggcagcgccacgagcatcgaccccaagggttac
atcacgagcctcgacaagagcatgatgaacggcgcccaggcgcaggtggccgacatcaac
cgcgtgcgggagctcctgacgtccgtcaccaagacgaaccccaacagccccggaggctgg
atcgccggcgcgcgcctcgaggagctggcgggcaagacggtggccgcccgcaacgtcatc
gcgcggggctgcgaaaagtgcccgaagaacgtcgacgtctggctggagaacatcaggctc
aacgatgtccgcaacgccaagatcattgccgccgaggccatcaagaagaacgacaagtcg
gtgctcttgtgggtcgaggccatgcggttggagaacgagccgcgggccaagaagagggtc
atccgactggcgctggatcacattcccgactcggaagcgctgtggaaggaggccgtcaat
ctcgaagaggaccagacggacgctcgcctgctgctggccaaggcgaccgagatcatcccc
ctgtcggtcgacctctggctggcgctggcgcggctggaaacgcccgaaaacgcacaaaag
gtgctgaacaaggcgagaaaggcggtgccgacatcgttcgaaatctggatcgccgctgcc
aggttacaggagcagctgggggccagcgtcaacgtgatgaagcgagctgtcaacgtcttg
gtcaaggaggcggccatgccgaaacgcgaggaatggatcgccgaggccgagaagtgcgag
gaggagggcgccctctggatgctcaagggccagatctacgaggacctcgacaagctcggc
caggcgcgcgaggcgtacagcacgggcgtcaaggccgtgcccgcgtcggtgccgctctgg
ctcctgtacgcccggctcgaggagcgcgccggcctcgtggtcaaggcgcgctccgtgcta
gaccgcgcgcgcctcgccgtgcccaagtcgccggcgctctggaggtgcccaagagcggcc
tgctgtggagcgagcagatctggcacctcgaggcggcgcacgcagcgcaagccgcgcagc
ctcgaggccatcaaaaaggtcgacaacgaccccatcctcttcgtcgccgtggcgcggctg
ttctggggcgagcgcaagctggagaaggcgcagaactggttcgagaaggcgctggtgctc
gacagcaacaacggcgacacgtgggcttggtactacaagttcctcctccagcatggcaca
gaagtgagtgaaccccccttcgggctcgatgctggacggacacccccggtacacgaggct
aacaattgcacgcaggagaaacggggcgaggtcatcaccaagtgtgtgctcgtcgagccg
agacacggcgaatactggcaggcgattgcgaagcgcccagccaacgcgagaaagggaacg
gaggagatcctcaacctggtggccaacagtctagaaaggtaa
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