Verticillium alfalfae: VDBG_00555
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Entry
VDBG_00555 CDS
T02227
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_00555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_00555
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDBG_00555
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
VDBG_00555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
AAA_30
T2SSE
SRP54
nSTAND3
Cas3-like_C_2
ABC_tran
OB_RNR_1st
Motif
Other DBs
NCBI-GeneID:
9529228
NCBI-ProteinID:
XP_003008873
UniProt:
C9S6D5
LinkDB
All DBs
AA seq
1004 aa
AA seq
DB search
MSSKKYAFLPMGDDELGPAKVTKEKKEKRSKHRHRDNDRNDRDRGERSSRRRSRSRSRSP
HRPAKQQYRKRDTDADDRWADEEPPSDIDNVGEEPEFKESAPKRVKLSHDEGGRDGDRDA
DLSDGAREELERQRDIEEREAFAKRLREKDDGKSKPRDSKRGPESAADRLAAMPDLRLRS
RQQYLQKREAEKLALLRKQVAEESEELRSGVRLSERERADFAKNREILRLAEERLKIDDH
KDGYYMPEDYITEKGKIDSRRKEDALYKRYVEKDEYGQEKFVTEHDEWEREQTAKAKAQI
SRGERENDDYDYVLDHDQYIQWNLDSRLPGEGKTMTKEEAFLAAQIEAAEKKQLSIQETR
KSLPIYQYRDDFLAAMEKYQILVIVGETGSGKTTQLPQYLHEAGYTKNGAKVGCTQPRRV
AAMSVAARVADEVGVKVGQEVGYNIRFEDNTSDKTILKYMTDGMLLREFMTEPDLAGYSA
IMIDEAHERTVHTDILLALLKDLARERPDLKLLISSATMNAEKFAAYFDDAPIYNIPGRR
YPVDIYYTPAPEANYLAAAITTVFQIHTTQGKGDILVFLTGQDEIDSAEQQIADTAKKLG
NRVKELIICPIYANLPSDLQAKIFEPTPEGARKVVLATNIAETSLTIDGIVYVIDPGFVK
ENVYNPATGMSNLVVAPCSRASANQRSGRAGRVGPGKCFRLYTKFAYMNEMDESPMPEIQ
RTNLNGVVLQLKSLGINELLDFEFMDPPPTEALIGALNQLFALQALNHKGELTKMGRQMA
EFPTDPMLAKAVLAADKEGCVEEVLSVVSMLSEASALFFRPKDKKIHADSARARFTVKEG
GDHLTLLNIWNQWVDSDFSPIWSRENFLQQRSLTRARDVRDQLAKLCERVEVSPSSCGAS
NLTPIRRAITAGFFPNAGRLQRSGDSYRTVKKNATVYIHPSSVLMGVDPPTKMLVYFELV
QTTKEYMRSCMPIEPKWLAELAPHFYKKKDMEGLEDKKMPKSRD
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaaaaagtacgcattcctcccaatgggagacgacgagcttggcccggccaaa
gtcacgaaggagaagaaggaaaagcgatccaagcatcgccaccgcgacaacgatcgcaat
gacagagaccgcggcgaacggtcttcgagacgacgcagccggtctaggtcacggtcgccc
catcgccccgccaagcagcagtaccgaaagcgcgataccgatgcggacgacaggtgggcc
gacgaggaaccgccttcggacatcgacaacgtgggagaagagcctgaattcaaagagtcg
gcgccgaaacgcgtcaagctcagtcatgacgagggcggccgtgatggcgacagggacgca
gacttgtccgacggcgccagggaggagctcgagcgccaacgcgatatcgaggaacgagag
gcgttcgccaagcgactgagagagaaggacgacggcaagtcaaagccgcgcgacagcaaa
cgaggcccagaaagcgctgccgaccgcctcgccgcgatgcccgacctgcgtctccgcagt
cgacagcagtacctacagaagcgcgaggccgagaagctggcgctgcttcgcaaacaggtc
gccgaggagagtgaggagctgaggagcggcgtcaggctgtcggagcgggagcgggctgac
tttgcgaaaaatcgagaaatcttgcgccttgccgaggagcgtctcaagatcgacgaccac
aaagacggatactacatgcctgaggactacatcaccgaaaagggcaaaatcgacagcagg
aggaaggaggacgcgctatacaagagatatgtcgagaaggacgagtacggccaggagaag
ttcgtcactgaacatgacgagtgggaaagggagcagactgcgaaggccaaagcccagatc
agcagaggcgagcgtgagaacgacgactacgactatgtcctcgaccacgaccagtacatt
cagtggaacctggactctaggctgccgggcgagggcaagaccatgacgaaggaggaggca
tttcttgccgcccagattgaggctgccgagaagaagcagctctcgatccaggagacgaga
aagagcctgcccatctatcagtatcgggatgacttcctagcggccatggagaaataccaa
attctggtcattgttggcgaaacgggatcaggcaaaaccacgcagctcccgcaatacctt
cacgaggcaggttacacaaagaatggcgccaaggttggctgcacgcaacctcgtcgtgtc
gccgccatgagtgtcgcggcgcgtgtcgccgatgaggttggtgtcaaggttggtcaggag
gtcggctacaatattcgtttcgaagacaacacaagcgacaagacaatcctgaagtacatg
acggatggcatgttgctgcgagaattcatgacggaacctgatctcgctggctactctgcc
atcatgatcgacgaggcgcacgagagaaccgtgcacacggacattttgcttgccctgctg
aaagatctggcccgagaacgacccgacctcaagttgctcatctcctcggccacaatgaat
gcggaaaagtttgctgcttatttcgacgatgcccccatttacaacattcctggccgtcgc
tatcccgtcgacatttactacacgcccgccccggaggcgaactaccttgccgctgccatc
actaccgtcttccagattcacacgacacaaggcaagggcgatatcctcgtgttcctgact
ggtcaagacgagattgactcggctgagcagcagattgccgacacagcaaagaagctgggg
aaccgtgtgaaggagctcatcatctgcccaatctacgctaatttgccttcggacctccag
gcgaaaatctttgagcccactcctgagggggctcgaaaggtcgtactggccacgaatatt
gcagagacgagtttgacaatcgacggtattgtctacgtcatcgacccgggctttgtcaag
gagaacgtgtacaacccagctactggcatgtccaatctcgtggtggcgccatgctctcga
gcttcagcaaaccagaggagcggtcgtgccggtcgtgtcggcccaggaaagtgcttcagg
ctgtacaccaagtttgcctatatgaacgagatggacgagtcacccatgcccgagattcag
cgcacgaacctcaacggcgttgtcctacagttgaagtcgttgggcatcaacgaactgctt
gactttgagttcatggacccccctcctacggaagcactcatcggtgctttgaaccagctg
tttgctctgcaagcgctcaaccacaagggtgagctgacaaaaatggggcgccagatggcc
gagtttcctacagatccaatgctggccaaggctgtcttggctgccgacaaggaaggctgc
gtcgaggaggtcttgtccgtcgtgtcgatgctgtcagaggcctcggccttgttcttcagg
cccaaggacaagaagatccatgccgacagtgcccgcgctcggtttactgtcaaagagggc
ggtgatcacctgacgctgctcaacatatggaaccagtgggttgatagtgacttctcgccc
atttggtctcgcgagaacttcttgcagcagcgctctttgacgcgcgctcgcgatgtgaga
gaccagctcgccaagctctgcgagcgcgtcgaagtgtccccttcgtcctgcggagcttcc
aacctcacacccatcagacgagccatcacggccgggttcttccctaatgccggacgtcta
caacgcagcggcgacagctaccgcaccgtcaagaagaacgccaccgtgtacatccacccc
agctcggtcctcatgggtgtggaccccccaacgaagatgctcgtctactttgagctggtg
cagaccaccaaagagtacatgcgcagctgtatgcccattgagcccaagtggcttgctgag
cttgccccccatttttacaagaagaaggacatggaaggactcgaggacaagaaaatgcct
aaatcacgggactga
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