Verticillium alfalfae: VDBG_00765
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Entry
VDBG_00765 CDS
T02227
Name
(RefSeq) nonsense-mediated mRNA decay protein
KO
K14327
regulator of nonsense transcripts 2
Organism
val
Verticillium alfalfae
Pathway
val03013
Nucleocytoplasmic transport
val03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
VDBG_00765
03015 mRNA surveillance pathway
VDBG_00765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_00765
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
VDBG_00765
mRNA cycle factors
P-body specific factors
VDBG_00765
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
FliD_C
Motif
Other DBs
NCBI-GeneID:
9530657
NCBI-ProteinID:
XP_003009083
UniProt:
C9S772
LinkDB
All DBs
AA seq
739 aa
AA seq
DB search
MDRARKRQLRSLNERAWAGETDVFTVNKSLDSSLKKNTAFIKRLRTAISSATLNTFIQEI
RTLSLHKYLSEIISACYEGLCRLKSPGEVDAGVEIVSALHQRFGASEFTEHLGWLLGKGM
ATPDKSILKTLPPEVREKEEKERISRQRVLLRIVSELWLVGVLKTLDDITRPDDATKGAT
GKVTDLKLKTSSSKGGAAEPFPLEVLKDLLGHDREHANLPLLVIFVKAFSWDILGVRPAA
AEGRKTVEEDGATRPAHESSGETDSANGPETDSDDSPFTPPELQEKFKSILKRYFDDVKN
HVLRDQKAIHSQSRRNAEAYVKSGEVFEDRQSNYEKQVKSQERLVANAQAIADVIGGRNA
GAANGSLGWLRLESTSRLGDGAGIWEDEEERRFYENLVDLKGKVPGMLLEDGKKKKPEND
EQVGKKIDAADVEAPKPTDAADDQSMAIANKTIGAQVDAVLARLPELTTKDAIDETAIDF
CFLNSKASRNRLIKALTEVPKGRGDLLPCWARLAATLGQYMPDVPKGLVDYLDAEFRSLQ
RRKEKDFLGQVRLGNIRYLAELTKFGIVPEHVVFHCLKVSMDDFSKMNIEIICNLLENCG
RYLLRNPETSPRMATFLETLQRKKSVQHIGQAERMLIENAVYYVDPPERPAIEQKERDPM
ELFIRKLIYMDMTKRNFSKILKQIRRLHWEETEVVTILEKVFSKPGKVNDASLRRSTWVS
STTTEWLSTLSSLTPCTRS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgcaaggaagcgccaactgcgctccctgaacgaacgcgcctgggctggcgag
acggatgttttcaccgtcaacaagtctctagactcttcgctcaagaagaacactgctttc
atcaagaggctccgaaccgccatctcttccgccaccctcaatacgttcatccaagagatc
cgaaccctcagccttcacaagtacctgtctgagatcatttcggcctgttatgaaggacta
tgccgactcaaatcgcccggcgaggtcgacgccggagtggaaattgtcagcgcgcttcat
cagcgatttggcgccagcgagttcacggaacacctgggatggctactcggcaagggcatg
gcaacacccgacaagagcatcctcaagactttgcccccggaggttcgcgaaaaggaggaa
aaggagcgcatcagccgccaacgcgtgctcctgcgaatcgtatccgaactatggcttgtt
ggggttttgaaaaccctcgatgacatcactcgaccggacgatgctacaaaaggtgcaaca
ggcaaggtcacggacctcaagttgaaaacaagttccagcaaaggcggggccgcggagcca
tttccgttggaagtgctgaaggatctgctaggtcacgatcgggaacacgccaacttgcca
ctacttgtcatcttcgtcaaagccttcagctgggacattcttggcgtccgacctgcagcg
gccgagggacggaagactgtggaagaagatggggccacacgacctgcgcatgagtcctcg
ggagaaactgatagtgctaatggccctgagaccgacagcgacgacagcccattcacacca
cctgagctccaggagaagttcaagagcatcctcaaacgttacttcgacgacgtcaagaac
cacgttctacgcgaccaaaaggccatccactcgcagtcgcgccgcaatgccgaggcttat
gtcaagtcgggggaggtgtttgaggaccgacaatccaactatgagaagcaagtcaagtcg
caagaaagactcgtcgccaacgcgcaagctatcgcagatgtcattgggggccgaaatgct
ggagctgcgaacggctcattgggctggttaaggctggagagtacttcgcggcttggcgat
ggtgctggcatctgggaagacgaagaggagcgacgcttctatgaaaatcttgtggatctg
aaaggcaaggtgcctgggatgcttctcgaggatggcaagaagaaaaagccggagaatgat
gagcaggtcggaaagaagatcgacgcggcggacgtcgaagcgccaaagccgactgatgcc
gccgatgaccagtcgatggccattgcaaacaagaccattggagcccaggtcgatgcagtc
ctagcccggttgccagaactaacgacaaaggatgccatcgatgaaacagcgattgacttt
tgcttcctaaactccaaggcttcgcggaacaggctgatcaaggctctcaccgaggtgcct
aaaggccgaggagacctgcttccctgctgggcacgcctggctgcgacgctcggccagtac
atgccagacgtccccaagggacttgtggactatcttgatgctgagttccgcagtctgcag
aggcgcaaggagaaggactttcttggtcaagtccgcttgggcaacattcggtacttggct
gagctaaccaagttcggcattgttcctgagcatgttgtgttccattgcctgaaggtcagt
atggatgacttttcaaagatgaacattgagattatctgcaatcttctggagaattgtggg
cgttacctcctgcgaaacccagaaacgtcgcctcgcatggcaacttttctcgagaccctt
cagcgaaagaagtcggtgcagcacatcggacaagccgagcgcatgttgatcgagaatgcc
gtttactatgttgatccgccggaacgcccagccatcgagcagaaggagcgtgaccctatg
gagctgttcatccgcaagctgatttacatggacatgactaagcgcaacttcagtaagatt
ctgaagcagattcgcagacttcactgggaagaaacggaggtcgtcaccatcctcgaaaag
gtcttttcgaaacccggcaaggtcaacgacgcatcgctgaggcgaagtacttgggtgagc
tctacaactaccgaatggttgagcaccctgtcatctttgacgccatgtacaagatcgtaa
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